Links to Additional Echinoderm Datasets: Difference between revisions
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This page will provide links to additional datasets for various echinoderms organized by class. | This page will provide links to additional datasets for various echinoderms organized by class. | ||
<p>'''Subphylum Echinozoa'''</p> | <p>'''Subphylum Echinozoa'''</p> | ||
:Class '''Echinoidea''' (sea urchins) | :Class '''Echinoidea''' (sea urchins) | ||
::''Eucidaris tribuloides'' (slate pencil urchin) | |||
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1/ GCA_001188425.1] | |||
:Class '''Holothuroidea''' (sea cucumbers) | :Class '''Holothuroidea''' (sea cucumbers) | ||
::''Apostichopus parvimensis'' (warty sea cucumber) | |||
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1/ GCA_000934455.1] | |||
<p>'''Subphylum Asterozoa'''</p> | <p>'''Subphylum Asterozoa'''</p> | ||
:Class '''Asteroidea''' (sea stars) | :Class '''Asteroidea''' (sea stars) | ||
::''Acanthaster planci'' (crown-of-thorns sea star) | ::''Acanthaster planci'' (crown-of-thorns sea star) | ||
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1] | :::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1] | ||
:::Publication: [http://doi.org/10.1038/nature22033 | :::Publication: [http://doi.org/10.1038/nature22033 2017] | ||
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA] | :::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA] | ||
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO] | :::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO] | ||
::''Asterias rubens'' (European sea star) | |||
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3] | |||
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA] | |||
::''Patiriella regularis'' (New Zealand sea star) | ::''Patiriella regularis'' (New Zealand sea star) | ||
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_900067625.1 GCA_900067625.1] | |||
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016] | |||
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA] | |||
::''Pisaster ochraceus'' (purple sea star) | ::''Pisaster ochraceus'' (purple sea star) | ||
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_010994315.1 GCA_010994315.1] | |||
:::Publication: [http://doi.org/10.1111/mec.15386 2020] | |||
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser] | |||
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA] | |||
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO] | |||
:Class '''Ophiuroidea''' (brittle stars) | |||
::''Ophiothrix spiculata'' (spiny brittle star) | |||
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1/ GCA_000969725.1] | |||
<p>'''Subphylum Crinozoa'''</p> | <p>'''Subphylum Crinozoa'''</p> | ||
:Class '''Crinoidea''' | :Class '''Crinoidea''' | ||
Revision as of 13:35, 29 April 2021
This page will provide links to additional datasets for various echinoderms organized by class.
Subphylum Echinozoa
- Class Echinoidea (sea urchins)
- Eucidaris tribuloides (slate pencil urchin)
- Accession: GCA_001188425.1
- Eucidaris tribuloides (slate pencil urchin)
- Class Holothuroidea (sea cucumbers)
- Apostichopus parvimensis (warty sea cucumber)
- Accession: GCA_000934455.1
- Apostichopus parvimensis (warty sea cucumber)
Subphylum Asterozoa
- Class Asteroidea (sea stars)
- Acanthaster planci (crown-of-thorns sea star)
- Accession: GCA_001949145.1
- Publication: 2017
- SRA
- GEO
- Acanthaster planci (crown-of-thorns sea star)
- Asterias rubens (European sea star)
- Accession: GCA_902459465.3
- SRA
- Asterias rubens (European sea star)
- Patiriella regularis (New Zealand sea star)
- Accession: GCA_900067625.1
- Publication: 2016
- SRA
- Patiriella regularis (New Zealand sea star)
- Pisaster ochraceus (purple sea star)
- Accession: GCA_010994315.1
- Publication: 2020
- UCSC genome browser
- SRA
- GEO
- Pisaster ochraceus (purple sea star)
- Class Ophiuroidea (brittle stars)
- Ophiothrix spiculata (spiny brittle star)
- Accession: GCA_000969725.1
- Ophiothrix spiculata (spiny brittle star)
Subphylum Crinozoa
- Class Crinoidea