Links to Additional Echinoderm Datasets: Difference between revisions

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This page will provide links to additional datasets for various echinoderms organized by class.
This page will provide links to additional datasets for various echinoderms organized by class.


''Pisaster ochraceus'' (purple sea star)


''Asterias rubens'' (common sea star)
<p>'''Subphylum Echinozoa'''</p>
:Class '''Echinoidea''' (sea urchins)


''Acanthaster planci'' (crown-of-thorns sea star)
::''Eucidaris tribuloides'' (slate pencil urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1/ GCA_001188425.1]


''Patiriella regularis'' (New Zealand sea star)
:Class '''Holothuroidea''' (sea cucumbers)
 
::''Apostichopus parvimensis'' (warty sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1/ GCA_000934455.1]
 
 
<p>'''Subphylum Asterozoa'''</p>
:Class '''Asteroidea''' (sea stars)
 
::''Acanthaster planci'' (crown-of-thorns sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1]
:::Publication: [http://doi.org/10.1038/nature22033 2017]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO]
 
::''Asterias rubens'' (European sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]
 
::''Patiriella regularis'' (New Zealand sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_900067625.1 GCA_900067625.1]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]
 
::''Pisaster ochraceus'' (purple sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_010994315.1 GCA_010994315.1]
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]
 
:Class '''Ophiuroidea''' (brittle stars)
 
::''Ophiothrix spiculata'' (spiny brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1/ GCA_000969725.1]
 
 
<p>'''Subphylum Crinozoa'''</p>
:Class '''Crinoidea'''

Revision as of 13:35, 29 April 2021

This page will provide links to additional datasets for various echinoderms organized by class.


Subphylum Echinozoa

Class Echinoidea (sea urchins)
Eucidaris tribuloides (slate pencil urchin)
Accession: GCA_001188425.1
Class Holothuroidea (sea cucumbers)
Apostichopus parvimensis (warty sea cucumber)
Accession: GCA_000934455.1


Subphylum Asterozoa

Class Asteroidea (sea stars)
Acanthaster planci (crown-of-thorns sea star)
Accession: GCA_001949145.1
Publication: 2017
SRA
GEO
Asterias rubens (European sea star)
Accession: GCA_902459465.3
SRA
Patiriella regularis (New Zealand sea star)
Accession: GCA_900067625.1
Publication: 2016
SRA
Pisaster ochraceus (purple sea star)
Accession: GCA_010994315.1
Publication: 2020
UCSC genome browser
SRA
GEO
Class Ophiuroidea (brittle stars)
Ophiothrix spiculata (spiny brittle star)
Accession: GCA_000969725.1


Subphylum Crinozoa

Class Crinoidea