ECB-FEAT-23045476: Difference between revisions
(Created page with "===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0=== The gene model for ''fat4'' appears to be incomplete, with the upstream locus, LOC115922231, most likely being...") |
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The gene model for ''fat4'' appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1. | The gene model for ''fat4'' appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1. | ||
[[File: | [[File:fat4 SMART Sp.png|thumb|Incomplete Model (''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]] | ||
[[File:LOC115922231+ | [[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and ''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]] | ||
[[File: | [[File:fat4 SignalP 6.0 Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]] | ||
[[File:LOC115922231+ | [[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]] | ||
[[File: | [[File:Fat4 ExPASy Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in ExPASy]] | ||
[[File:LOC115922231+ | [[File:LOC115922231+fat4 ExPASy Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in ExPASy]] | ||
===<i>Patiria miniata</i> Genome Assembly v3.0=== | ===<i>Patiria miniata</i> Genome Assembly v3.0=== | ||
Revision as of 14:11, 1 May 2023
Strongylocentrotus purpuratus Genome Assembly v5.0
The gene model for fat4 appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1.
Patiria miniata Genome Assembly v3.0
The gene model for fat4 appears to be incomplete, with the upstream locus, LOC119727897, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of 5’-UTR within the mRNA transcript, XM_038199976, and the adjacency of the coding loci on scaffold, NW_024037059.1.
