Links to Additional Echinoderm Datasets: Difference between revisions

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This page will provide links to additional datasets for various echinoderms organized by class.
This page will provide links to additional datasets for various echinoderms organized by class.


<p>'''Subphylum Echinozoa'''</p>
<p>'''Subphylum Echinozoa'''</p>
:Class '''Echinoidea''' (sea urchins)
:Class '''Echinoidea''' (sea urchins)
::''Eucidaris tribuloides'' (slate pencil urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1/ GCA_001188425.1]


:Class '''Holothuroidea''' (sea cucumbers)
:Class '''Holothuroidea''' (sea cucumbers)
::''Apostichopus parvimensis'' (warty sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1/ GCA_000934455.1]


<p>'''Subphylum Asterozoa'''</p>
<p>'''Subphylum Asterozoa'''</p>
:Class '''Asteroidea''' (sea stars)
:Class '''Asteroidea''' (sea stars)
::''Asterias rubens'' (European sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]


::''Acanthaster planci'' (crown-of-thorns sea star)
::''Acanthaster planci'' (crown-of-thorns sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1]
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1]
:::Publication: [http://doi.org/10.1038/nature22033 2017]
:::Publication: [http://doi.org/10.1038/nature22033 Nature 2017]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO]
::''Asterias rubens'' (European sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]


::''Patiriella regularis'' (New Zealand sea star)
::''Patiriella regularis'' (New Zealand sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_900067625.1 GCA_900067625.1]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]


::''Pisaster ochraceus'' (purple sea star)
::''Pisaster ochraceus'' (purple sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_010994315.1 GCA_010994315.1]
 
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]


:Class '''Ophiuroidea''' (brittle stars)
:Class '''Ophiuroidea''' (brittle stars)
::''Ophiothrix spiculata'' (spiny brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1/ GCA_000969725.1]


<p>'''Subphylum Crinozoa'''</p>
<p>'''Subphylum Crinozoa'''</p>
:Class '''Crinoidea'''
:Class '''Crinoidea'''

Revision as of 11:01, 8 July 2020

This page will provide links to additional datasets for various echinoderms organized by class.

Subphylum Echinozoa

Class Echinoidea (sea urchins)
Class Holothuroidea (sea cucumbers)

Subphylum Asterozoa

Class Asteroidea (sea stars)
Asterias rubens (European sea star)
Accession: GCA_902459465.3
SRA
Acanthaster planci (crown-of-thorns sea star)
Accession: GCA_001949145.1
Publication: Nature 2017
SRA
GEO
Patiriella regularis (New Zealand sea star)
Pisaster ochraceus (purple sea star)


Class Ophiuroidea (brittle stars)

Subphylum Crinozoa

Class Crinoidea
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