Difference between revisions of "BAC Table"

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(→‎BAC Table)
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Revision as of 17:01, 22 July 2020

BAC Table

Sequences of BACs (as best we know them) can be accessed by clicking on BAC NCBI link.

These BAC clones are available by request. We will also entertain requests to make additional constructs as time permits. For new preparations, you will need to find the BAC by computer or by screening our libraries. In order to prepare a new recombinant BAC we will need the ID of the BAC clone from our libraries, the sequence of the gene it contains and evidence that you know the position of the gene in the BAC. This is a bit complicated to explain here.

To order BACs for non-commercial purpose please email Veronica Hinman or Olga Zueva. Here is a brief guide on BAC library: BAC Library Guide. For further questions reqarding recombinant BACs techonology please inquire of those below.


Olga Zueva
Veronica Hinman
Andy Cameron

Species Gene Name BAC Name Reporter NCBI Link BAC Size WHL ID SPU ID Comment

S.purpuratus

3Acolf/3Apcol

Sp_3055B12

GFP

[1]

125kb

WHL22.438943



S.purpuratus

3Apcol(W01)

Sp_3066N3

GFP

[2]

125kb




S.purpuratus

3Apcol(w88)

Sp_R33066N3


[3]


WHL22.589988

SPU_003768

Echinobase length:122kb

S.purpuratus

3'Hex

Sp_R33044F0


AC176398.1



SPU_021829


S.purpuratus

Acsbg1

Sp_1020M3


[4]


WHL22.59646,WHL22.59649



S.purpuratus

Ada_1

Sp_113F15


[5]





S.purpuratus

Ada_1

Sp_R3113F15


[6]


WHL22.162939.1

SPU_023134


S.purpuratus

Akt

Sp_3050P16

Cherry

[7]





S.purpuratus

Alx1

Sp_143J11


[8]





S.purpuratus

Alx1

Sp_042I08_L|Sp_42I8

GFP

[9]

133kb




S.purpuratus

Alx1_1

Sp_R33063K17

GFP

[10]

135kb

WHL22.731056

SPU_025302


S.purpuratus

Ankfy12

Sp_3097C6

GFP

[11]

50kb ,100kb

WHL.22.751898

SPU_024172


S.purpuratus

Apobec

Sp_112F15_S


AC130962





S.purpuratus

Arhgap28

Sp_3080H22

GFP

[12]

80kb,200kb

WHL.22.409669


Echinobase length:155kb

S.purpuratus

Arhgap28

Sp_R33097N6


[13]

80kb,200kb

WHL22.409669

SPU_027628


S.purpuratus

Astacin1

Sp_3004P19

GFP

[14]





S.purpuratus

Astacin1

Sp_R33088G04


[15]

125kb,160kb

WHL22.642085

SPU_019655


S.purpuratus

Astacin5

Sp_17G24

GFP

[16]

125kb,160kb

WHL.22.642085.0



S.purpuratus

Astacin5

Sp_R34007P18


[17]

125kb,160kb

WHL22.237823

SPU_002178


S.purpuratus

Atbf1

Sp_3042J1


[18]

156kb




S.purpuratus

B4galt6_8

Sp_R33045N1


[19]


WHL22.385964

SPU_007019


S.purpuratus

Betacatenin

Sp_154N12_L


AC131447





S.purpuratus

Blimp1

Sp_163O19_L


AC131508





S.purpuratus

Bmp2/4

Sp_1108H16


[20]





S.purpuratus

Brachyury

Sp_117A03_L

GFP,RFP,Dendra

AC131378

131kb




S.purpuratus

Brn 124

Sp_16C24

GFP

[21]

207kb




S.purpuratus

Brn 124

Sp_180F15


[22]





S.purpuratus

Brn 124

Sp_95O3


[23]





S.purpuratus

C14orf124

Sp_R33083P17


[24]


WHL22.38

SPU_027030


S.purpuratus

C3bf

Sp_076N15_L


[25]





S.purpuratus

C4mso

Sp_3002L17

GFP

MK371211

110kb

WHL.22.317555.0.,WHL.22.317555 .1

SPU_018974

Echinobase length:33kb

S.purpuratus

C6orf70L

Sp_14B10,Sp_3101E10,Sp_3099N11


[26]





S.purpuratus

C6orf70L

Sp_R34013G18


[27]


WHL22.440137

SPU_020361


S.purpuratus

Cah10L

Sp_R321I13


[28]





S.purpuratus

Cah10L

Sp_R33055A16


[29]


WHL22.642603

SPU_004135


S.purpuratus

Cah10L

Sp_R33057B15


[30]


WHL22.642603

SPU_004136


S.purpuratus

Capk

Sp_083N11_S


AC131512





S.purpuratus

CcLta1

Sp_R38H4

GFP

[31]

150000

WHL22.764666

SPU_011692


S.purpuratus

Cdx

Sp_3088G4

Cherry, GFP

[32]





S.purpuratus

Clect_14

Sp_3110K19

GFP

[33]





S.purpuratus

Clect_14

Sp_R33032K03


[34]


WHL22.39473

SPU_005991


S.purpuratus

ClvhH1

Sp_R33103O23

GFP

[35]

11kb

WHL22.674821

SPU_024567


S.purpuratus

Col4a2

Sp_R33077D06

GFP

[36]


WHL22.77073

SPU_015708


S.purpuratus

Cpa2L_3

Sp_R31040I20

GFP

[37]


WHL22.153705

SPU_014935


S.purpuratus

Csrnp2

Sp_43E11

GFP

[38]

155kb

WHL22.749825.0 /1

SPU_025496


S.purpuratus

Cyclophillin

Sp_014A23_L


[39]





S.purpuratus

Cycpln

1111 B19

(No GFP)

[40]


WHL22.733408



S.purpuratus

Dach

Sp_12 P15

GFP

[41]

246kb




S.purpuratus

Dachouslik

Sp_R33025P1


AC178568.1



SPU_008299


S.purpuratus

Deaf1L

Sp_R34B03


[42]


WHL22.158312

SPU_022541


S.purpuratus

Decorin

Sp_119C23_L


[43]





S.purpuratus

Delta

Sp_46A16

Cherry,GFP

AC131451

126kb




S.purpuratus

Derp13

Sp_R34010K23

GFP

[44]

120kb

WHL22.505560

SPU_007210


S.purpuratus

Dlx

Sp_26L24

GFP

[45]





S.purpuratus

Dlx

Sp_47I19

GFP

[46]





S.purpuratus

Dopt

Sp_188B16_L


AC131448





S.purpuratus

Dr

Sp_44J22

GFP

MK371208


WHL22.544154



S.purpuratus

Dr

Sp_R316F8


[47]


WHL22.544154

SPU_017106


S.purpuratus

Dri

Sp_118J14_L

GFP

[48]

135kb




S.purpuratus

Dri

Sp_74F08

GFP

[49]

142kb




S.purpuratus

E2f3

Sp_3093P10


[50]

17kb




S.purpuratus

E2f3

Sp_3100O17


[51]





S.purpuratus

Ecr (fxr)

Sp_1018H13


[52]





S.purpuratus

Elk

Lv_12B5

GFP

[53]

182kb




S.purpuratus

Elk

Sp_23B5

GFP

[54]





S.purpuratus

Endo16

Sp_127I21_S

GFP

AC160518

55kb




S.purpuratus

Ephrin

Sp_024N08_L


[55]





S.purpuratus

Erg

Sp_14H16

GFP

[56]

151kb




S.purpuratus

Erg

Sp_R33063M23


[57]


WHL22.552472

SPU_018483


S.purpuratus

Erg

Sp_R33085K1


AC178220.1



SPU_009100


S.purpuratus

Ese

Sp_1032O14

GFP

[58]





S.purpuratus

Ese

Sp_3107I24

GFP

[59]

163kb




S.purpuratus

Ets1

Sp_28J16

GFP

[60]

110kb




S.purpuratus

Ets1

Sp_92P5

GFP

[61]

120kb




S.purpuratus

Eve

Sp_79A2

GFP,Cherry,H2B Cerulean

AC131510

158kb




S.purpuratus

Fbn3_2

Sp_R33090B11


[62]


WHL22.145770

SPU_014065


S.purpuratus

Fbox

Sp_038F09_L


[63]





S.purpuratus

FcgbpL

Sp_3027D15

GFP

[64]

145kb

WHL22.23776

SPU_000439


S.purpuratus

Fmo2

Sp_055A17_L


AC146985





S.purpuratus

Fmo3

Sp_072G21_L


AC146986





S.purpuratus

Foxa

Sp_41 I19

GFP,RFP, Dendra, Cerulean

[65]

150kb




S.purpuratus

Foxb

Sp_114N15_L

GFP

AC131247

135kb

WHL.22.743430



S.purpuratus

Foxb

Sp_R33087A22


AC131247

135kb

WHL22.743430

SPU_004551


S.purpuratus

Foxc

Sp_136D11_L


[66]




Echinobase length:136kb

S.purpuratus

Foxc

Sp_3062K23


[67]

237000




S.purpuratus

FoxD

Sp_3053L6

Cherry

[68]



SPU_014418.1


S.purpuratus

FoxF

Sp_34M18


[69]





S.purpuratus

Foxg

Sp_3055A17

GFP

[70]

200kb




S.purpuratus

Foxg

Sp_3101O07


[71]





S.purpuratus

Fox n2/3

Sp_3088J6


[72]





S.purpuratus

Foxn2/3

Sp_307J6

GFP

[73]

143kb




S.purpuratus

Foxn2/3

Sp_3088J6

GFP

[74]

143kb




S.purpuratus

Foxp

Sp_3052G21


[75]





S.purpuratus

Foxq2

Sp_3044A21


[76]

72kb




S.purpuratus

Foxy(cy)

Sp_1032H24

GFP

[77]

118kb




S.purpuratus

Fray

Sp_3096N17, Sp_1014L2


[78]


WHL22.249962,WHL22.249953



S.purpuratus

FreD

Sp_3027C3


[79]

121kb

WHL22.427938



S.purpuratus

Frzd

Sp_153L07_S


[80]





S.purpuratus

Gatac

Sp_081C18_L

GFP

[81]





S.purpuratus

Gata e

Sp_40I9


[82]





S.purpuratus

Gatae

Sp_040I09_L

GFP

AC146984

100kb




S.purpuratus

Gatae

Sp_091A10_L


[83]





S.purpuratus

Gcm

Sp_187M9


[84]





S.purpuratus

Gcn2

Sp_1130J9


[85]


WHL22.244656

SPU_025674


S.purpuratus

Gelsolinlike

Sp_118E15_S


AC131379





S.purpuratus

Gelsolin putative

Sp_R332B3


AC149964.2



SPU_000296


S.purpuratus

Gsc

Sp_3051B6

GFP,H2B Cerulean

[86]

201kb




S.purpuratus

Hairy 2/4(Hes)

Sp_103B20


[87]





S.purpuratus

Hao1_4

Sp_12F6

(no GFP)

[88]


WHL22.329268



S.purpuratus

Hbn

Sp_3067M10


[89]





S.purpuratus

Hedgehog

Sp_4011N13

GFP

[90]

178kb




S.purpuratus

Hes

Sp_R346N1


AC177340.1



SPU_012918


S.purpuratus

Hesblik

Sp_R33095M1


AC180573.1



SPU_026488


S.purpuratus

Hesc

Sp_3120N1


[91]





S.purpuratus

Hesc

Sp_7G5

GFP

[92]

217kb

WHL22.235339



S.purpuratus

Hex

Sp_6P7

GFP

[93]

145kb




S.purpuratus

Hex

Sp_R33050O2


AC181029.1



SPU_017990


S.purpuratus

Hexb

Sp_3050O24

GFP

[94]


WHL22.364740

SPU_017990


S.purpuratus

Hgcn5

Sp_089M06_L


[95]





S.purpuratus

Hhex

Sp_3032G13

GFP

[96]


22.626418



S.purpuratus

Hhex

Sp_3080E21

GFP,Cherry

[97]


22.626418



S.purpuratus

Hibch

Sp_3061L15


[98]


22.119352



S.purpuratus

Hmx

Sp_15F1


[99]

121kb




S.purpuratus

Hmx

Sp_4004C20

GFP, cherry

[100]

144kb




S.purpuratus

Hnf1

Sp_25L21

GFP

[101]

168kb




S.purpuratus

Hnf1like

Sp_3003N7


[102]





S.purpuratus

Hnf1like

Sp_42F2


[103]





S.purpuratus

Hnf4

Sp_3045J21


[104]





S.purpuratus

Hnf4

Sp_3095 J22


[105]





S.purpuratus

Hnf6

Sp_13D8

GFP, Cherry

[106]

253kb




S.purpuratus

Hnf6

Sp_079H14_S


[107]





S.purpuratus

Hnf6

Sp_088I24_S


[108]





S.purpuratus

Hox1113a_b

Sp_135O12_L

GFP

AC131446





S.purpuratus

Hox 11/13b

Sp_103k2

GFP

[109]

160kb




S.purpuratus

Hox 11/13b

Sp_119l11

GFP

[110]

145kb




S.purpuratus

Hox 11/13b

Sp_122G5

GFP

[111]

160kb




S.purpuratus

Hox 11/13b

Sp_135012

GFP

[112]

105kb




S.purpuratus

Hox 11/13b

Sp_142P8

GFP,H2B Cerulean

[113]

192kb




S.purpuratus

Hox 11/13b

Sp_22P14

GFP

[114]

180kb




S.purpuratus

Hox 11/13b

Sp_4005C17

GFP, Cherry

[115]

142kb




S.purpuratus

Hox7

Sp_13H13

GFP

[116]

236kb




S.purpuratus

Hps4L

Sp_R31111E20


[117]


WHL22.562382.0

SPU_025757


S.purpuratus

Hypp_2177

Sp_R318J6


[118]


WHL22.643455

SPU_027439


S.purpuratus

Hypp_2998, Hypp_2999

Sp_17B17

GFP

MK371206

145kb

WHL.22.239379

SPU_018406


S.purpuratus

Hypp_2998, Hypp_2999

Sp_R335J4


[119]

145kb

WHL22.239379

SPU_018407

Echinobase length: 203kb

S.purpuratus

Hypp_375

Sp_4001C1 ,Sp_1013A10 ,Sp_1108B10


[120]


WHL22.69123

SPU_024491


S.purpuratus

Ia1

Sp_1031P15


[121]





S.purpuratus

Ia1

Sp_75G4

cherry

[122]





S.purpuratus

Id

Sp_R33120H1


AC176846.1



SPU_021469


S.purpuratus

Id

Sp_R336E


AC180233.1



SPU_000791


S.purpuratus

Ig/Egf/Vwc

Sp_3080E2,Sp_3037J19


[123]


WHL22.139301

SPU_017202


S.purpuratus

Inturned

Sp_14H15, Sp_1102N20

GFP

[124]


WHL22.391869

SPU_008070


S.purpuratus

Ipgm

Sp_3071M24


[125]


WHL22.633329,WHL22.633332

SPU_010377


S.purpuratus

Ire1,Ern2L

Sp_R33118A23

GFP

[126]


WHL22.270316.1

SPU_017184


S.purpuratus

Irxa

Sp_3094G12


[127]

206kb




S.purpuratus

Kakapo

Sp_012G10_S


[128]





S.purpuratus

Krox

Sp_163O19

GFP

AC131502

7093kb




S.purpuratus

Lefty

Sp_3105O6

GFP, Cherry

[129]





S.purpuratus

Lhx2.9

Sp_1027H9

GFP, Cherry

[130]

124kb




S.purpuratus

Lim

Sp_108P04_L

GFP, Cherry

AC131507

138kb




S.purpuratus

Limk

Sp_R3_3110L19


[131]


22.431075.2

SPU_022207


S.purpuratus

Lmo4

Sp_1008K19 (or K10?)


[132]





S.purpuratus

Lmo4

Sp_3106F20


[133]





S.purpuratus

Lmo4

Sp_3119D15


[134]





S.purpuratus

Lmpx

Sp_010A10_L


[135]





S.purpuratus

Lmr

Sp_4001F24

GFP

[136]


22.327381.0

SPU_006026


S.purpuratus

Lox

Sp_1004F15

cherry

[137]





S.purpuratus

MitF

Sp_1103B18

GFP

[138]

152kb

WHL.22.677144

SPU_008175

note

S.purpuratus

Mrpl12lik

Sp_R31102E


AC179348.1



SPU_024214

Echinobase length: 99kb

S.purpuratus

Mrpl2

Sp_R33083L1


AC180730.1



SPU_009141


S.purpuratus

Msp130

Sp_R32B17, Sp_R3113E14,Sp_R316A11, Sp_R33019H3


[139]


WHL22.438943

SPU_002088


S.purpuratus

Msp130

Sp_R33055B12

GFP

[140]

135kb

WHL22.438943

SPU_002088


S.purpuratus

Msp130_1

Sp_R32B17


[141]





S.purpuratus

Msp130_1

Sp_R33055B12, Sp_R3113E14,Sp_R316A11


[142]





S.purpuratus

Msp130r1

Sp_R32B17, Sp_R33055B12, Sp_R3113E14,Sp_R316A11


[143]


WHL22.438976

SPU_013822


S.purpuratus

Msp130r3

Sp_R311C23, Sp_R32B17, Sp_R33055B12, Sp_R3113E14,Sp_R316A11


[144]


WHL22.438997

SPU_013823


S.purpuratus

Msp130related

Sp_R31021C1


AC179718.1



SPU_014496


S.purpuratus

Msp130related

Sp_R32B1


AC176140.1



SPU_013822


S.purpuratus

Msp130related

Sp_R33092L1


AC180600.1



SPU_015763


S.purpuratus

Msp130related

Sp_R363K2


AC179470.1



SPU_014492


S.purpuratus

Msx

Sp_R33010N1


AC168725.2



SPU_020565


S.purpuratus

Mt14/MmpL7

Sp_4001O12,Sp_3065G23,Sp_37M11


[145]


WHL22.312130

SPU_028750


S.purpuratus

Mt14/MmpL7

Sp_R34001O12


[146]


WHL22.312033

SPU_028748


S.purpuratus

NA

Sp_R33071I16


[147]


WHL22.148948

SPU_023291


S.purpuratus

Nanos2

Sp_1111E20

GFP

[148]

41kb




S.purpuratus

Nk1

Sp_066D22_L


[149]





S.purpuratus

Nk1

Sp_142B02_L

GFP, Cherry

[150]

128kb




S.purpuratus

Nk2.2

Sp_4019 C23

GFP, Cherry

[151]

187kb




S.purpuratus

Nk7

Sp_1029A14

GFP

[152]

186kb

WHL22.567485.0

SPU_022573


S.purpuratus

Nk7

Sp_115H6,1029A14,40L3,13L2


[153]





S.purpuratus

Nk7

Sp_R340L3

GFP

MK371204


WHL22.567485

SPU_022573


S.purpuratus

Nkx21

Sp_131N15_S


[154]





S.purpuratus

Nkx32

Sp_1037P9

cherry

[155]





S.purpuratus

Nodal

Sp_7F21

GFP, RFP

[156]

180kb




S.purpuratus

None

Sp_R34007M3


[157]


WHL22.239320

SPU_018403


S.purpuratus

Not

Sp_157D03_L

Cherry

[158]

162kb




S.purpuratus

Notch

Sp_191I13

GFP

[159]

171kb




S.purpuratus

Notch

Sp_R317A1


AC175935.1



SPU_027006


S.purpuratus

Notch

Sp_191I13_L


AC131449





S.purpuratus

Npff2L4

Sp_115K10

GFP

[160]


WHL.22.523272.0

SPU_025314


S.purpuratus

Nr1

Sp_R311I1


AC181201.1



SPU_028255

Echinobase length: 75kb

S.purpuratus

Nrl

Sp_007C10_S


[161]





S.purpuratus

Orct

Sp_095C14_S


AC131514





S.purpuratus

Osr

Sp_63M1

GFP

[162]

142kb




S.purpuratus

Otx

Sp_006F13_L

GFP

AC131452

161kb




S.purpuratus

Otx

Sp_6F13ex6


[163]

162kb




S.purpuratus

P16

Sp_1113K17

GFP

[164]

120kb

WHL.22.239481

SPU_018408


S.purpuratus

P16

Sp_R31037B24


[165]


WHL22.239481

SPU_018408

Echinobase length: 148kb

S.purpuratus

P58_a

Sp_3027D15

GFP

[166]

145kb

WHL.22.23776

SPU_00439

Echinobase length: 167kb.Same clone and WHL as FcgbpL

S.purpuratus

P58_a

Sp_R33077H02


[167]

145kb

WHL22.23776

SPU_004159


S.purpuratus

Pak(p21)ph

Sp_4004H24

GFP

MK371209


WHL.22.294876

SPU_003534


S.purpuratus

Pax2/5/8

Sp_1038B19


[168]




Echinobase length: 83kb

S.purpuratus

Pax2/5/8

Sp_4029I17


[169]





S.purpuratus

Pbx

Sp_53H21


[170]





S.purpuratus

Pdgfr/vegfrL

Sp_R33090K8


[171]


WHL22.240520

SPU_000310


S.purpuratus

Pdgfr/vegfrlik

Sp_R33055P1


AC178040.1



SPU_021021


S.purpuratus

Pks

Sp_080H21_L

GFP

AC131453

144kb




S.purpuratus

Pks

Sp_085B07_L


[172]





S.purpuratus

PKS

Sp_80H21


AC178793.1



SPU_028395


S.purpuratus

PKS

Sp_R321O1


AC178793.1



SPU_028395


S.purpuratus

Plxdc2, Plxdc2_1

Sp_3061I23


[173]


WHL22.605782



S.purpuratus

Pm27

Sp_074F08_L


[174]





S.purpuratus

Pm27

Sp_140A02_L


[175]





S.purpuratus

Pmar1

Sp_R31018E1


AC179748.1



SPU_015828


S.purpuratus

Pmar1

Sp_R315A


AC149920.2



SPU_015829


S.purpuratus

Pmar1

Sp_R34013A1


AC168388.2



SPU_014721


S.purpuratus

Polyabinding

Sp_073E18_L


[176]





S.purpuratus

Protocad15L

R31003A8

GFP

[177]

120kb

WHL22.138023

SPU_003730


S.purpuratus

Prox

Sp_3106N18

GFP,H2B

[178]

186kb




S.purpuratus

Ptpriz

Sp_16L6

GFP

[179]

120kb

WHL.22.416979.0



S.purpuratus

Ptpriz

Sp_5E5

GFP

MK371207


WHL.22.416979.0

SPU_023115


S.purpuratus

RigiL8

Sp_7A24, Sp_5B24


[180]





S.purpuratus

Rx

Sp_3067M20 or (M10)


[181]





S.purpuratus

Samd9L_2

Sp_R31107I17


[182]


WHL22.254949

SPU_005515

Echinobase length: 159kb

S.purpuratus

Sc1

Sp_1018N24

GFP

[183]

122kb




S.purpuratus

Sc1

Sp_175G9

GFP

[184]




Echinobase length: 159kb

S.purpuratus

Sc1

Sp_3097G9

GFP

[185]

267kb




S.purpuratus

Sc1

Sp_54D1

GFP

[186]





S.purpuratus

SerpL11

Sp_3044E1


[187]


WHL22.332375

SPU_004543


S.purpuratus

Shr2

Sp_20B21


[188]

111




S.purpuratus

Sip1

Sp_4026F15


[189]





S.purpuratus

Six1/2

Sp_1026L10

GFP

[190]

168kb




S.purpuratus

Six1/2

Sp_3058B7

GFP

[191]

168kb




S.purpuratus

Six 3

Sp_1040G11


[192]





S.purpuratus

Six 3

Sp_3045N20

Cherry

[193]

92kb




S.purpuratus

Six 3

Sp_304 N20

cherry

[194]

92kb




S.purpuratus

Slc2a5

Sp_R35M11

GFP

[195]

95kb

WHL22.692383

SPU_027868


S.purpuratus

Sm29

Sp_R35D23

GFP

[196]

60kb

WHL22.39470

SPU_005990


S.purpuratus

Sm30

Sp_R33049J


AC177965.1



SPU_000826


S.purpuratus

Sm30

Sp_R34009E1


AC179070.1



SPU_004869


S.purpuratus

Sm30c

Sp_4009E11

GFP

MK371205

34kb



Echinobase length: 80kb

S.purpuratus

Sm30c

Sp_R31019K19


[197]


WHL22.518121

SPU_000827


S.purpuratus

Sm30E

Sp_R34009E11

GFP

[198]

100kb

WHL22.70610

SPU_004867


S.purpuratus

Sm37

Sp_3112c9


[199]


WHL22.742403



S.purpuratus

Sm50

Sp_74F8

GFP

[200]

144kb




S.purpuratus

Soxb2

Sp_058L24_L


AC131509





S.purpuratus

Soxc

Sp_3114N15

GFP, Cherry

[201]

159kb




S.purpuratus

Soxe

Sp_3014I4

GFP

[202]

110kb




S.purpuratus

SpClectin

Sp_R339A20


[203]


WHL22.728834

SPU_007882


S.purpuratus

SpClectin

Sp_R34012A17


[204]


WHL22.728834

SPU_007882


S.purpuratus

Spnsh1

Sp_1008F15

GFP

[205]


WHL22.60674.1

SPU_000847


S.purpuratus

SpPpap2b

Sp_R363M7


[206]


WHL22.310985

SPU_011127


S.purpuratus

Srcr185

Sp_R34014J20


[207]


WHL22.253874

SPU_022285


S.purpuratus

Synb

Sp_16D6

GFP

[208]

130kb




S.purpuratus

Synb

Sp_56D3

GFP

[209]

150kb




S.purpuratus

Tbrain

Sp_031J08_L

GFP, Cherry

AC131381

137kb




S.purpuratus

Tbx 2/3

Sp_45A14

GFP

[210]





S.purpuratus

Tbx6/1

Sp_R34002B2


AC168415.2



SPU_020345


S.purpuratus

Tead4

Sp_1111C11


[211]





S.purpuratus

Tel

Sp_3122C5

GFP

[212]





S.purpuratus

TgfbrtII

Sp_3054B11, Sp_1035B22(noGFP)


[213]


WHL22.191099.0



S.purpuratus

TgfbrtII

Sp_R33054B11


[214]


WHL22.191099.0

SPU_017511


S.purpuratus

Tgif

Sp_1028K14

Cherry

[215]

190kb




S.purpuratus

Tgif

Sp_3014J14 (or 3114J14?)

GFP, Cherry

[216]

107kb




S.purpuratus

Tho1

Sp_R31037M09


[217]


WHL22.614092

SPU_007382


S.purpuratus

Tim1

Sp_16N12


[218]





S.purpuratus

Tk8

Sp_R315I1


[219]





S.purpuratus

Tk8

Sp_R315I2


[220]


WHL22.147868

SPU_004747


S.purpuratus

Tk8

Sp_R33076H20


[221]





S.purpuratus

Tk8

Sp_R33076M20


[222]





S.purpuratus

Tk8

Sp_R33085F05


[223]





S.purpuratus

Tll

Sp_3114F24

GFP

[224]

11kb




S.purpuratus

Tmem68

Sp_3120J18


[225]


WHL22.629570

SPU_028851


S.purpuratus

Tob

Sp_3121D18

GFP

[226]


WHL.22.145164

SPU_016792

Echinobase length: 110000kb

S.purpuratus

Tollip_1

Sp_R33069K18

GFP

[227]


WHL22.544727

SPU_026252


S.purpuratus

Trim2_1

Sp_R34P15


[228]


WHL22.742590

SPU_020546


S.purpuratus

Trpm3_3 (W06)

Sp_R344J22

GFP

[229]

130kb

WHL22.540206

SPU_018142


S.purpuratus

Trpm3_4

Sp_R34H20


[230]


WHL22.652421

SPU_011587


S.purpuratus

Ubiquitin

Sp_5B3

GFP

[231]

150kb




S.purpuratus

Unc4.1

Sp_3005N3


[232]





S.purpuratus

Unc4.1

Sp_3032G21


[233]





S.purpuratus

Unc4.1

Sp_3060A11


[234]





S.purpuratus

Unc4.1

Sp_3060A21


[235]





S.purpuratus

UnivinBMP2.4

Sp_1108 H16


[236]





S.purpuratus

UnivinBMP2.4

Sp_4013 P18


[237]





S.purpuratus

Vasa

Sp_1032F3

GFP

[238]

159kb




S.purpuratus

Vegf

Sp_R31109H


AC181571.1



SPU_005737


S.purpuratus

Vegf2

Sp_3040L10


[239]


WHL22.194484

SPU_005737


S.purpuratus

Vegf3 Erica


GFP

[240]





S.purpuratus

Vegf3 Julie

Sp_4045B11

GFP

[241]

78kb




S.purpuratus

VegFr

Sp_R33007G22


[242]


WHL22.240520

SPU_000310


S.purpuratus

Vparpf_3

Sp_4015K5


[243]





S.purpuratus

Wnt5

Sp_1109L17

GFP

[244]

135kb




S.purpuratus

Wnt8

Sp_040I09_L|Sp_041A08_S

GFP

AC131383

78kb




S.purpuratus

Wnt8

Sp_099F11_L


AC131454





S.purpuratus

Z160

Sp_10K16

GFP

[245]


WHL22.6653.0

SPU_018075


S.purpuratus

Z160

Sp_3J11, Sp_10K16,Sp_1022C20


[246]


WHL22.6653

SPU_018075


S.purpuratus

Z166

Sp_3086D15

GFP

[247]

105kb




S.purpuratus

Z167

Sp_15N2


[248]





S.purpuratus

Z188

Sp_3053B21

GFP

[249]

217kb




S.purpuratus

Z199 (Sp5)

Sp_4014H5


[250]





S.franciscanus

Blimp1

Sf_1137N7


[251]





S.franciscanus

Brachyury

Sf_124O17

GFP

[252]

100kb




S.franciscanus

Brachyury

Sf_24O7

GFP

[253]

100kb




S.franciscanus

Brn1/2/4

Sf_13A7, Sf_10K23, Sf_21K17, Sf_33H3, Sf_33H4, Sf_53H1, Sf_56C1, Sf_56N22, Sf_63B19, Sf_68M12, Sf_76C13, Sf_80I21, Sf_82P14


[254]





S.franciscanus

Delta

Sf_135H4


[255]





S.franciscanus

Dlx

Sf_126E15


[256]





S.franciscanus

Endo16

Sf_140P23


[257]





S.franciscanus

Erg

Sf_156H6, Sf_61I12, Sf_71H11, Sf_108K22, Sf_114N21, Sf_267G13


[258]





S.franciscanus

Eve

Sf_113P9


[259]





S.franciscanus

FoxA

Sf_121I13


[260]





S.franciscanus

Gatae

Sf_121N5

GFP

[261]





S.franciscanus

Gatae

Sf_21N5 Julies list

GFP

[262]





S.franciscanus

Gcm

Sf_1190M4


[263]





S.franciscanus

Hox11/13b

Sf_186O23, Sf_114F5, Sf_183B16


[264]





S.franciscanus

IrxA

Sf_126G6, Sf_56N10


[265]





S.franciscanus

Nk2.2

Sf_156K11 70B18 76M21 116N10


[266]





S.franciscanus

Otx

Sf_148I10


[267]





S.franciscanus

Tbrain

Sf_1150J8


[268]





S.franciscanus

Wnt8

Sf_12H20


[269]





P.lividus

Hbox12

Pl_020N20_S


[270]





P.lividus

Lim

Pl_070B09_S


[271]





P.lividus

Nodal

Pl_237K10 (127K10 Julie)

GFP, Cherry

[272]





L.variegatus

Alx1

Lv_7 J11

GFP

[273]

162kb




L.variegatus

Apobec

Lv_031L12_S


AC131495




Echinobase length:51kb

L.variegatus

Apobec

Lv_265E21_L


[274]





L.variegatus

Apol

Lv_161M17_S


[275]





L.variegatus

Betacatenin

Lv_048J05_S, Lv_48J5


AC131499





L.variegatus

Blimp1

Lv_60B16


[276]





L.variegatus

Blimp1/krox

Lv_060B16_S


AC131502





L.variegatus

Bmp2/4

Lv_048J05_S


AC131499





L.variegatus

Brachyury

Lv_104N16_L

GFP

AC146990

139kb




L.variegatus

Brachyury

Lv_187F03_S


AC131486





L.variegatus

Brn1 2/4

Lv_1I8


[277]





L.variegatus

Brn1 2/4

Lv_86D12


[278]





L.variegatus

Capk

Lv_086E23_L


AC146991





L.variegatus

Capk

Lv_177F13_S


[279]





L.variegatus

Cyclophillin

Lv_007J20_L


[280]





L.variegatus

Dac

Lv_259P14, Lv_263F11


[281]





L.variegatus

Decorin

Lv_114C22_S


AC131377





L.variegatus

Delta

Lv_129M22_L


AC146987





L.variegatus

Delta

Lv_020B17_S


[282]





L.variegatus

Delta

Lv_174J14_S


[283]





L.variegatus

Dlx

Lv_17M23, Lv_93K13


[284]





L.variegatus

Dopt

Lv_037C14_S


AC131497





L.variegatus

Dri

Lv_6L12, Lv_147N11


[285]




Echinobase length:169kb.80130 smear

L.variegatus

Ecr

Lv_232F19


[286]





L.variegatus

Endo16

Lv_199M10_L

GFP

AC160519

22kb




L.variegatus

Ese

Lv_260N2


[287]





L.variegatus

Ets1

Lv_31F19

GFP

[288]

132kb




L.variegatus

Eve

Lv_112E15_S


AC131376





L.variegatus

Fmo2

Lv_223C01


AC146993




Echinobase length:167kb.Same clone and WHL as P58a

L.variegatus

Fmo3

Lv_213G22


[289]





L.variegatus

Foxa

Lv_004G18_S


AC131500





L.variegatus

Foxa

Lv_46J3

GFP

AC146988

133kb




L.variegatus

Foxb

Lv_092H22_S


AC131504





L.variegatus

Foxg

Lv_15K23


[290]





L.variegatus

Foxk

Lv_186I1


[291]





L.variegatus

Foxn2/3

Lv_206M1; Lv_206C22: Lv_217D12


[292]





L.variegatus

Foxo

Lv_13C1; Lv_192P13


[293]





L.variegatus

Gatac

Lv_044D13_S


[294]





L.variegatus

Gatac

Lv_43P8


[295]





L.variegatus

Gatae

Lv_159L22_L

GFP

AC146989

135kb




L.variegatus

Gatae

Lv_032P20_S


AC131496





L.variegatus

Gcm

Lv_018J03_S


AC131487





L.variegatus

Gelsolin

Lv_066E20_S


[296]





L.variegatus

Gsc

Lv_157F2; Lv_188E3


[297]





L.variegatus

Hes

Lv_091N14_S


[298]





L.variegatus

Hmx

Lv_076P20_S


AC131503





L.variegatus

Hnf1

Lv_252B16; 252C17


[299]





L.variegatus

Hnf6

Lv_015K10_S


[300]





L.variegatus

Hox1113a

Lv_235L15


AC131563





L.variegatus

Hox1113b

Lv_235L15_S


AC131563





L.variegatus

IrxA

Lv_275N21


[301]





L.variegatus

Kakapo

Lv_033E22_X


[302]





L.variegatus

Kakapo

Lv_229D15_S


AC131492





L.variegatus

Lim1

Lv_097A18_S


AC131505





L.variegatus

Nfe2

Lv_12M23; Lv_23F8; Lv_28N3


[303]





L.variegatus

Nfkb

Lv_96M23


[304]





L.variegatus

Nk1

Lv_125K05_L


[305]





L.variegatus

Nk2.2

Lv_261O1; Lv_266P4; Lv_271G24


[306]





L.variegatus

Nodal

Lv_169O12

GFP

[307]





L.variegatus

Not

Lv_219N08_S


[308]





L.variegatus

Notch

Lv_030M02_L


[309]





L.variegatus

Notch

Lv_097A07_S


[310]





L.variegatus

Nrl

Lv_024M04_S


AC131494





L.variegatus

Otx

Lv_229L05_S


AC131493





L.variegatus

Pks

Lv_053J24_S


AC131501





L.variegatus

Pm27

Lv_188D08_L


[311]





L.variegatus

Pmar1

Lv_170H13_S


AC131562





L.variegatus

Profilin

Lv_048B05_S


[312]





L.variegatus

Prox

Lv_37H6; Lv_39I5; Lv_171G6


[313]





L.variegatus

Sip1

Lv_99D3; Lv_101P20; Lv_253P19


[314]





L.variegatus

Six1/2

Lv_58E21


[315]





L.variegatus

Snail (Z88)

Lv_9B9


[316]





L.variegatus

SoxB1

Lv_153I1; 187G6


[317]





L.variegatus

Soxc

Lv_208L03_S


AC131489





L.variegatus

Tbr

Lv_192 I24


[318]





L.variegatus

Tbrain

Lv_192I24_S

GFP

AC131488

551kb




L.variegatus

Tbx2/3

Lv_53J19; Lv_56A3


[319]





L.variegatus

Tel

Lv_270E1


[320]





L.variegatus

Wnt5

Lv_036N14_S


[321]





L.variegatus

Wnt8

Lv_064C04_L

GFP

[322]

127kb




L.variegatus

Wnt8

Lv_183H12_S


AC131485





L.variegatus

Z13

Lv_10B12


[323]





E.tribuloides

Eve

Et_161A22


[324]

120kb




A.punctulata

Brachyury

Ap_144G2

GFP

[325]

169kb




A.punctulata

Delta

Ap_158F20

GFP

[326]

36kb




A.punctulata

Eve

Ap_159E4

GFP

[327]

120kb




A.punctulata

Foxa

Ap_66L2


[328]





A.punctulata

Foxa

Ap_176M11_L

GFP

[329]

133kb




A.punctulata

Gatac

Ap_149G11

GFP

[330]

104kb




A.punctulata

Gatae

Ap_99O22

GFP

[331]

145kb




A.punctulata

Gcm

Ap_73C21

GFP

[332]

119kb




A.punctulata

Otx

Ap_22F20


[333]





A.punctulata

Otx

Ap_46D17

GFP

[334]





A.punctulata

Tbrain

Ap_10E23

GFP

[335]





A.punctulata

Wnt8

Ap_38E20


[336]





A.miniata

Brachyury

Am_187C19_S

GFP

[337]

90kb




A.miniata

Delta

Am_30B2

GFP

[338]

150kb




A.miniata

Foxa

Am_146M24

GFP

[339]

90kb




A.miniata

Gatae

Am_185N5

GFP

[340]

150kb




A.miniata

Gatae

Am_185F05_L


[341]





A.miniata

Gatae

Am_208B02_S


[342]





A.miniata

Otx

Am_116H21_L

GFP

[343]

169kb




A.miniata

Soxc

24A4

GFP

[344]





A.miniata

Soxc

67M9

GFP

[345]





A.miniata

Tbr

Sp_128I20

GFP

[346]





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