ECB-FEAT-23045476

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Strongylocentrotus purpuratus Genome Assembly v5.0

The gene model for fat4 appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1.

File:fat4 SMART Sp.png
Incomplete Model (fat4) for Strongylocentrotus purpuratus in SMART
File:LOC115922231+fat4 SMART Sp.png
Complete Model(LOC115922231 and fat4) for Strongylocentrotus purpuratus in SMART
File:fat4 SignalP 6.0 Sp.png
Incomplete Model (fat4) for Strongylocentrotus purpuratus in SignalP 6.0
File:LOC115922231+fat4 SignalP 6.0 Sp.png
Complete Model (LOC115922231 and fat4) for Strongylocentrotus purpuratus in SignalP 6.0
File:Fat4 ExPASy Sp.png
Incomplete Model (fat4) for Strongylocentrotus purpuratus in ExPASy
File:LOC115922231+fat4 ExPASy Sp.png
Complete Model (LOC115922231 and fat4) for Strongylocentrotus purpuratus in ExPASy

Patiria miniata Genome Assembly v3.0

The gene model for fat4 appears to be incomplete, with the upstream locus, LOC119727897, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of 5’-UTR within the mRNA transcript, XM_038199976, and the adjacency of the coding loci on scaffold, NW_024037059.1.

File:Fat4 Pmin SMART.png
Incomplete Model (fat4) for Patiria miniata in SMART
Complete Model (LOC119727897 and fat4) for Patiria miniata in SMART
File:Fat4 SignalP 6.0 Pm.png
Incomplete Model (fat4) for Patiria miniata in SignalP 6.0