ECB-FEAT-23045511

Strongylocentrotus purpuratus Genome Assembly v5.0

The gene model for LOC580282 appears to be incomplete, with the upstream locus, LOC115922232, most likely being part of this gene based on several lines of evidence. The lines of evidence for a split-gene misannotation include the lack of signal peptide sequences yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of a 5’-UTR in the mRNA transcript, XM_030981285.1, and the adjacency of the coding loci on scaffold NW_022145596.1.

Incomplete Model (LOC580282) for Strongylocentrotus purpuratus in SMART

Complete Model (LOC115922232 and LOC580282) for Strongylocentrotus purpuratus in SMART

Incomplete Model (LOC580282) for Strongylocentrotus purpuratus in Signal 6.0P

Complete Model (LOC115922232 and LOC580282) for Strongylocentrotus purpuratus in Signal 6.0P

Lytechinus variegatus Genome Assembly v3.0

The gene model, LOC121430458, appears to be incomplete, with the upstream locus, LOC121412825, actually being part of the gene based on several lines of evidence. These lines of evidence include the lack of signal peptide sequences yielded by SMART (Letunic et al., 2006) and Signal 6.0P analyses (Teufel et al., 2022), the absence of a 5’-UTR of the mRNA transcript (XM_041627728.1), and the adjacency of the coding loci on chr1.

Incomplete Model (LOC121430458) for Lytechinus variegatus in SMART

Complete Model (LOC121412825 and LOC121430458) for Lytechinus variegatus in SMART

Incomplete Model (LOC121430458) for Lytechinus variegatus in Signal6.0P

Complete Model (LOC121412825 and LOC121430458) for Lytechinus variegatus in Signal 6.0P