Genome Assemblies: Difference between revisions
Jump to navigation
Jump to search
imported>Echinobase |
imported>Echinobase |
||
| Line 19: | Line 19: | ||
table, th, td { | |||
border: 1px solid black; | |||
border-collapse: collapse; | |||
} | |||
th, td { | |||
padding: 5px; | |||
} | |||
</style> | |||
</head> | |||
<body> | |||
<h2>Cellpadding</h2> | |||
<p>Cell padding specifies the space between the cell content and its borders.</p> | |||
<table style="width:100%"> | <table style="width:100%"> | ||
| Line 46: | Line 54: | ||
<td>80</td> | <td>80</td> | ||
</tr> | </tr> | ||
</table> | |||
</table> | </table> | ||
Revision as of 13:23, 4 December 2019
Echinoderm Genome Assemblies by Species
Strongylocentrotus purpuratus
Assembly_3.1 (Spur_3.1)
Assembly 2.6(Spur 2.6)
Assembly_2.5(Spur_2.5)
Assembly_2.1(Spur_2.1)
Assembly_0.5(Spur_0.5)
Patiria miniata
V2.0 Assembly
We sought to improve the Patiria miniata genome assembly with additional PacBio sequences. We generated a new PacBio read dataset at the Duke University Sequencing Center using our reference individual DNA. The read dataset contains 2 million reads and 15.8 billion bp. The read N50 is 10.4 Kb. We used PBJelly2 to combine the PacBio reads with the previously assembled contigs. The results were an improvement in contig size and number with only a small reduction in the number of scaffolds (Table). The P. miniata Gene v2.0 set was generated using MAKER2 pipeline from v2.0 genome assembly.
table, th, td {
border: 1px solid black; border-collapse: collapse;
} th, td {
padding: 5px;
} </style> </head> <body>
Cellpadding
Cell padding specifies the space between the cell content and its borders.
| Firstname | Lastname | Age |
|---|---|---|
| Jill | Smith | 50 |
| Eve | Jackson | 94 |
| John | Doe | 80 |