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[[Category:Genes]]<small>Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 </small> | [[Category:Genes]]<small>Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 </small> | ||
===SPU_026395 (<i>Strongylocentrotus purpuratus</i> Genome assembly v.3.1)=== | |||
The sequence generated from the Spur3.1 assembly has a frameshift in exon 8 resulting in premature termination of translation of the predicted peptide relative to NCBI accession JQ354984. Due to this apparent sequencing error in the assembly, the 4734 nt cds and 1577 aa peptide sequences included in this entry are derived from JQ354984.The sequence generated from the Spur3.1 assembly has a frameshift in exon 8 resulting in premature termination of translation of the predicted peptide relative to NCBI accession JQ354984. Due to this apparent sequencing error in the assembly, the 4734 nt cds and 1577 aa peptide sequences included in this entry are derived from JQ354984. In the GLEAN-derived model, exon 22 at Scaffold290:85627..85937 (-) encodes 103 amino acids that match those found in NCBI accession JQ354984. There are three other potential 103 amino acid-encoding exons between exons 21 and 23; these are at Scaffold290:92648..92958 (-) (used in overlapping RNA-Seq derived model WHL22.377810.0), Scaffold290:90505..90815 (-) and Scaffold290:88008..88318 (-). | |||
Latest revision as of 10:42, 18 January 2023
Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023
SPU_026395 (Strongylocentrotus purpuratus Genome assembly v.3.1)
The sequence generated from the Spur3.1 assembly has a frameshift in exon 8 resulting in premature termination of translation of the predicted peptide relative to NCBI accession JQ354984. Due to this apparent sequencing error in the assembly, the 4734 nt cds and 1577 aa peptide sequences included in this entry are derived from JQ354984.The sequence generated from the Spur3.1 assembly has a frameshift in exon 8 resulting in premature termination of translation of the predicted peptide relative to NCBI accession JQ354984. Due to this apparent sequencing error in the assembly, the 4734 nt cds and 1577 aa peptide sequences included in this entry are derived from JQ354984. In the GLEAN-derived model, exon 22 at Scaffold290:85627..85937 (-) encodes 103 amino acids that match those found in NCBI accession JQ354984. There are three other potential 103 amino acid-encoding exons between exons 21 and 23; these are at Scaffold290:92648..92958 (-) (used in overlapping RNA-Seq derived model WHL22.377810.0), Scaffold290:90505..90815 (-) and Scaffold290:88008..88318 (-).