Links to Additional Echinoderm Datasets: Difference between revisions

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<p>'''Subphylum Echinozoa'''</p>
<p>'''Subphylum Echinozoa'''</p>
:Class '''Echinoidea''' (sea urchins)
:Class '''Echinoidea''' (sea urchins)
::''Arbacia lixula'' (black urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_963669155.1 GCA_963669155.1]
::''Diadema setosum'' (long-spined sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_033980235.1 GCA_033980235.1]
::''Echinometra lucunter'' (rock boring urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_029962745.1 GCA_029962745.1]
::''Eucidaris tribuloides'' (slate pencil urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1 GCA_001188425.1]
::''Heliocidaris crassispina'' (fine-thorned sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_040801975.1 GCA_040801975.1]
::''Heliocidaris erythrogramma'' (short spined sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025617745.1 GCA_025617745.1]
::''Heliocidaris tuberculata'' (tuberculate urchin, red sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025618425.1 GCA_025618425.1]
::''Hemicentrotus pulcherrimus'' (sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_003118195.1 GCA_003118195.1]
::''Mesocentrotus franciscanus'' (red sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_037976565.1 GCA_037976565.1]
::''Paracentrotus lividus'' (common urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_940671915.1 GCA_940671915.1]
::''Temnopleurus reevesii'' (Reeve's sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB12129 PRJDB12129]


:Class '''Holothuroidea''' (sea cucumbers)
:Class '''Holothuroidea''' (sea cucumbers)
::''Apostichopus japonicus'' (Japanese sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002754855.1 GCA_002754855.1]


::''Apostichopus parvimensis'' (warty sea cucumber)
::''Apostichopus parvimensis'' (warty sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1/ GCA_000934455.1]
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1 GCA_000934455.1]
 
::''Holothuria leucospilota'' (black sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_029531755.1 GCA_029531755.1]
 
::''Holothuria scabra'' (sandfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_026123075.1 GCA_026123075.1]
 
::''Stichopus chloronotus'' (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021234535.1 GCA_021234535.1]




Line 23: Line 69:
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]
::''Luidia sarsii'' (starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_949987565.1 GCA_949987565.1]
::''Marthasterias glacialis'' (spiny starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_911728455.2 GCA_911728455.2]


::''Patiriella regularis'' (New Zealand sea star)
::''Patiriella regularis'' (New Zealand sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_900067625.1 GCA_900067625.1]
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_900067625.1 GCA_900067625.1]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]
::''Pisaster brevispinus'' (pink sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_023634235.1 GCA_023634235.1]
::''Plazaster borealis'' (octopus starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021014325.1 GCA_021014325.1]


::''Pisaster ochraceus'' (purple sea star)
::''Pisaster ochraceus'' (purple sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_010994315.1 GCA_010994315.1]
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_010994315.2 GCA_010994315.2]
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]


:Class '''Ophiuroidea''' (brittle stars)
:Class '''Ophiuroidea''' (brittle stars)
::''Amphiura filiformis'' (brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_039555335.1 GCA_039555335.1]


::''Ophiothrix spiculata'' (spiny brittle star)
::''Ophiothrix spiculata'' (spiny brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1/ GCA_000969725.1]
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1 GCA_000969725.1]




<p>'''Subphylum Crinozoa'''</p>
<p>'''Subphylum Crinozoa'''</p>
:Class '''Crinoidea'''
:Class '''Crinoidea'''
::''Antedon bifida'' (rosy feather star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963402885.1 GCA_963402885.1]

Latest revision as of 11:22, 4 September 2024

This page will provide links to additional datasets for various echinoderms organized by class.


Subphylum Echinozoa

Class Echinoidea (sea urchins)
Arbacia lixula (black urchin)
Accession: GCA_963669155.1
Diadema setosum (long-spined sea urchin)
Accession: GCA_033980235.1
Echinometra lucunter (rock boring urchin)
Accession: GCA_029962745.1
Eucidaris tribuloides (slate pencil urchin)
Accession: GCA_001188425.1
Heliocidaris crassispina (fine-thorned sea urchin)
Accession: GCA_040801975.1
Heliocidaris erythrogramma (short spined sea urchin)
Accession: GCA_025617745.1
Heliocidaris tuberculata (tuberculate urchin, red sea urchin)
Accession: GCA_025618425.1
Hemicentrotus pulcherrimus (sea urchin)
Accession: GCA_003118195.1
Mesocentrotus franciscanus (red sea urchin)
Accession: GCA_037976565.1
Paracentrotus lividus (common urchin)
Accession: GCA_940671915.1
Temnopleurus reevesii (Reeve's sea urchin)
Accession: PRJDB12129


Class Holothuroidea (sea cucumbers)
Apostichopus japonicus (Japanese sea cucumber)
Accession: GCA_002754855.1
Apostichopus parvimensis (warty sea cucumber)
Accession: GCA_000934455.1
Holothuria leucospilota (black sea cucumber)
Accession: GCA_029531755.1
Holothuria scabra (sandfish)
Accession: GCA_026123075.1
Stichopus chloronotus (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
Accession: GCA_021234535.1


Subphylum Asterozoa

Class Asteroidea (sea stars)
Acanthaster planci (crown-of-thorns sea star)
Accession: GCA_001949145.1
Publication: 2017
SRA
GEO
Asterias rubens (European sea star)
Accession: GCA_902459465.3
SRA
Luidia sarsii (starfish)
Accession: GCA_949987565.1
Marthasterias glacialis (spiny starfish)
Accession: GCA_911728455.2
Patiriella regularis (New Zealand sea star)
Accession: GCA_900067625.1
Publication: 2016
SRA
Pisaster brevispinus (pink sea star)
Accession: GCA_023634235.1
Plazaster borealis (octopus starfish)
Accession: GCA_021014325.1
Pisaster ochraceus (purple sea star)
Accession: GCA_010994315.2
Publication: 2020
UCSC genome browser
SRA
GEO


Class Ophiuroidea (brittle stars)
Amphiura filiformis (brittle star)
Accession: GCA_039555335.1
Ophiothrix spiculata (spiny brittle star)
Accession: GCA_000969725.1


Subphylum Crinozoa

Class Crinoidea
Antedon bifida (rosy feather star)
Accession: GCA_963402885.1
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