Links to Additional Echinoderm Datasets: Difference between revisions

From EchinoWiki
Jump to navigation Jump to search
← Older edit
imported>Ctelmer
No edit summary
No edit summary
 
(21 intermediate revisions by 2 users not shown)
Line 1: Line 1:
This page will provide links to additional datasets for various echinoderms organized by class.
This page will provide links to additional datasets for various echinoderms organized by class.


''Pisaster ochraceus'' (purple sea star)


''Asterias rubens'' (common sea star)
<p>'''Subphylum Echinozoa'''</p>
:Class '''Echinoidea''' (sea urchins)


''Acanthaster planci'' (crown-of-thorns sea star)
::''Arbacia lixula'' (black urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_963669155.1 GCA_963669155.1]


''Patiriella regularis'' (New Zealand sea star)
::''Diadema setosum'' (long-spined sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_033980235.1 GCA_033980235.1]
 
::''Echinometra lucunter'' (rock boring urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_029962745.1 GCA_029962745.1]
 
::''Eucidaris tribuloides'' (slate pencil urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1 GCA_001188425.1]
 
::''Heliocidaris crassispina'' (fine-thorned sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_040801975.1 GCA_040801975.1]
 
::''Heliocidaris erythrogramma'' (short spined sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025617745.1 GCA_025617745.1]
 
::''Heliocidaris tuberculata'' (tuberculate urchin, red sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025618425.1 GCA_025618425.1]
 
::''Hemicentrotus pulcherrimus'' (sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_003118195.1 GCA_003118195.1]
 
::''Mesocentrotus franciscanus'' (red sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_037976565.1 GCA_037976565.1]
 
::''Paracentrotus lividus'' (common urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_940671915.1 GCA_940671915.1]
 
::''Temnopleurus reevesii'' (Reeve's sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB12129 PRJDB12129]
 
 
:Class '''Holothuroidea''' (sea cucumbers)
 
::''Apostichopus japonicus'' (Japanese sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002754855.1 GCA_002754855.1]
 
::''Apostichopus parvimensis'' (warty sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1 GCA_000934455.1]
 
::''Holothuria leucospilota'' (black sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_029531755.1 GCA_029531755.1]
 
::''Holothuria scabra'' (sandfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_026123075.1 GCA_026123075.1]
 
::''Stichopus chloronotus'' (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021234535.1 GCA_021234535.1]
 
 
<p>'''Subphylum Asterozoa'''</p>
:Class '''Asteroidea''' (sea stars)
 
::''Acanthaster planci'' (crown-of-thorns sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1]
:::Publication: [http://doi.org/10.1038/nature22033 2017]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO]
 
::''Asterias rubens'' (European sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]
 
::''Luidia sarsii'' (starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_949987565.1 GCA_949987565.1]
 
::''Marthasterias glacialis'' (spiny starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_911728455.2 GCA_911728455.2]
 
::''Patiriella regularis'' (New Zealand sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_900067625.1 GCA_900067625.1]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]
 
::''Pisaster brevispinus'' (pink sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_023634235.1 GCA_023634235.1]
 
::''Plazaster borealis'' (octopus starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021014325.1 GCA_021014325.1]
 
::''Pisaster ochraceus'' (purple sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_010994315.2 GCA_010994315.2]
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]
 
 
:Class '''Ophiuroidea''' (brittle stars)
 
::''Amphiura filiformis'' (brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_039555335.1 GCA_039555335.1]
 
::''Ophiothrix spiculata'' (spiny brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1 GCA_000969725.1]
 
 
<p>'''Subphylum Crinozoa'''</p>
:Class '''Crinoidea'''
 
::''Antedon bifida'' (rosy feather star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963402885.1 GCA_963402885.1]

Latest revision as of 11:22, 4 September 2024

This page will provide links to additional datasets for various echinoderms organized by class.


Subphylum Echinozoa

Class Echinoidea (sea urchins)
Arbacia lixula (black urchin)
Accession: GCA_963669155.1
Diadema setosum (long-spined sea urchin)
Accession: GCA_033980235.1
Echinometra lucunter (rock boring urchin)
Accession: GCA_029962745.1
Eucidaris tribuloides (slate pencil urchin)
Accession: GCA_001188425.1
Heliocidaris crassispina (fine-thorned sea urchin)
Accession: GCA_040801975.1
Heliocidaris erythrogramma (short spined sea urchin)
Accession: GCA_025617745.1
Heliocidaris tuberculata (tuberculate urchin, red sea urchin)
Accession: GCA_025618425.1
Hemicentrotus pulcherrimus (sea urchin)
Accession: GCA_003118195.1
Mesocentrotus franciscanus (red sea urchin)
Accession: GCA_037976565.1
Paracentrotus lividus (common urchin)
Accession: GCA_940671915.1
Temnopleurus reevesii (Reeve's sea urchin)
Accession: PRJDB12129


Class Holothuroidea (sea cucumbers)
Apostichopus japonicus (Japanese sea cucumber)
Accession: GCA_002754855.1
Apostichopus parvimensis (warty sea cucumber)
Accession: GCA_000934455.1
Holothuria leucospilota (black sea cucumber)
Accession: GCA_029531755.1
Holothuria scabra (sandfish)
Accession: GCA_026123075.1
Stichopus chloronotus (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
Accession: GCA_021234535.1


Subphylum Asterozoa

Class Asteroidea (sea stars)
Acanthaster planci (crown-of-thorns sea star)
Accession: GCA_001949145.1
Publication: 2017
SRA
GEO
Asterias rubens (European sea star)
Accession: GCA_902459465.3
SRA
Luidia sarsii (starfish)
Accession: GCA_949987565.1
Marthasterias glacialis (spiny starfish)
Accession: GCA_911728455.2
Patiriella regularis (New Zealand sea star)
Accession: GCA_900067625.1
Publication: 2016
SRA
Pisaster brevispinus (pink sea star)
Accession: GCA_023634235.1
Plazaster borealis (octopus starfish)
Accession: GCA_021014325.1
Pisaster ochraceus (purple sea star)
Accession: GCA_010994315.2
Publication: 2020
UCSC genome browser
SRA
GEO


Class Ophiuroidea (brittle stars)
Amphiura filiformis (brittle star)
Accession: GCA_039555335.1
Ophiothrix spiculata (spiny brittle star)
Accession: GCA_000969725.1


Subphylum Crinozoa

Class Crinoidea
Antedon bifida (rosy feather star)
Accession: GCA_963402885.1
Retrieved from "https://wiki.echinobase.org/echinowiki/index.php?title=Links_to_Additional_Echinoderm_Datasets&oldid=3839"