Endomes QPCR

QPCR Data Relevant to Endomesoderm Network

Note that the gene names listed in the table have been updated according to nomenclature guidelines and may have changed on the gene pages in Echinobase, however, they are listed as synonyms and the gene pages can be found by searching for the name listed in the table.

May 18, 2010

Ub, ubiquitin mRNA control used for internal standardization; C_T, cycle no. at threshold; C, control embryo sample; Exp, sample from perturbed embryos. The quantity of transcript at any point in the reaction is I(1.94^C_T), where I is the initial amount in the reaction mixture. A positive number means the number of transcripts is increased by the perturbation; a negative number means the number of transcripts is decreased. Data are listed that are considered significant where significant means more than three-fold increase or decrease from control transcript levels (normalized C_T difference from control is <-1.6 or >+1.6). Smaller effects are shown as "NS", except where individual NS data are included together with other significant measurements to display scatter or inconsistencies amongst different batches of cDNA. Commas separate replicate measurements in the same cDNA batch; slashes indicate different batches of cDNA from independent experiments.

Abbreviations
MASO: Morpholino-substituted antisense oligo nucleotide
MOE: Messenger RNA overexpression
EN: Engrailed repressor domain

Gene	Perturbation	12-16 h	17-21 h	23-28 h	30-36 h	41-48 h	60-72 h	Data of:
alx124	Pmar1 MOE	+4.4/+4.7		+3.2/+5.8				K. Young, L. Vega & P. Oliveri
	Cad MOE	-5.3/-4.8		-5.2/-3.2				K. Young, L. Vega & P. Oliveri
	Pmar1 MOE + Cad MOE	+3.1/+3.9		+4.3/+7.5				K. Young, L. Vega & P. Oliveri
	Pmar1-En	+2.4/+2.3		+2.0/+2.9				K. Young, L. Vega & P. Oliveri
	Pmar1-En + Cad MOE	+2.5		+2.6/+4.3				K. Young, L. Vega & P. Oliveri
	Alx1 MASO		+1.9,+1.7/+1.6/NS/+2.2/NS/NS/NS	NS,NS/+1.9/NS/NS/NS/NS/NS				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Soxb1 MOE26	-3.1,-3.1	NS,NS	NS,NS				L. Chen
	Ets1 MASO	NS/NS	NS,NS/NS/NS/NS/NS	-3.6/-1.8/-2.0,NS/-1.7/-1.95/-2.58/NS				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Snail MASO48			NS/NS/NS				S. Wu & D. McClay
	Tgif MASO		NS/NS/NS/NS/NS/NS/NS/NS	(-2.41/NS/-2.49/NS/NS/NS/-2.05/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Tel MASO		+1.63/NS/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/+2.0/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		+2.02/+2.27/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		+3.11/NS/+3.34/NS/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Blimp1b MASO		NS/NS/+1.67/+1.94/NS	(NS/NS/NS/NS/NS[24 h])(NS/NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/+1.83	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(NS/NS/NS/+1.65[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/-1.91/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(NS/-1.62/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
blimp1a	Brn1/2/4 MASO					-4.4		C. Yuh
blimp1b	Blimp1b MASO	+2.1,+1.8	NS/NS/NS/NS/NS/NS/NS/+1.57/+1.77/NS	(NS/+1.86/NS/+1.86/+1.58[24 h])(NS/+1.83/NS/NS[27 h])NS/NS		+2.3		C. Livi, I. Peter & J. Yun
	Blimp1b-En	-4.0,-4.8	-7.8,-8.0	-7.4,-5.0/-5.3/-2.1,-2.2				C. Livi
	Cad MOE	-5.9/-4.8/-4.2	-4.6/-7.8	-5.1/-14.3/-4.6				A. Ransick, T. Minokawa, P. Oliveri & L. Vega
	Otx-En	-2.3/-1.6	NS/NS/NS	-2.5/-3.3/NS				A. Ransick & T. Minokawa
	Eve MASO	NS/NS/NS	NS/-2.44/NS	(-2.12/NS/-3.34[24 h])(-3.13/-3.69/-1.74[27 h])-1.9,-2.2				A. Ransick, C. Livi & I. Peter
	Pmar1 MOE			-2.6				P. Oliveri & L. Vega
	Wnt8 MASO	(NS,-2.6,-2.1 (12 h)[12 h])(-2.8,NS,-3.1 (16 h)[16 h])						J. Smith
	Tgif MASO		NS/NS/NS/NS	(-1.72/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	N MASO		+2.35/+1.94/NS	(+2.0/NS/NS/NS[24 h])(+1.85/NS/NS/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/-1.94	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	GataE MASO		NS/NS/NS/NS	(NS/NS/NS/-2.22[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/-1.93/-1.47	(-2.05/-2.0/-1.86[24 h])(-1.77/-1.6/-2.23[27 h])				I. Peter
bra	GataE MASO		-2.8,-2.4/-2.8,-3.2/-1.6	-1.6,NS/-3.3,-3.2/-2.1,-2.2	-2.8			P. Y. Lee & C. Yuh
	Blimp1b-En	-2.0,-3.3	-9.0,-9.0	-5.2,-5.5/-5.0/-2.3				C. Livi
	FoxA MASO		NS/NS	(NS[24 h])(NS[27 h])NS/NS/NS	+1.6/+1.6/+2.1	NS/NS		P. Oliveri, I. Peter & J. Yun
	Cad MOE	NS/NS	-4.7/-2.1	-4.4/-3.0/-2.4				A. Ransick, T. Minokawa & C. Livi
	Elk-En			-3.2,-2.2,-4.1				M. Arnone
	Otx-En		-2.5/-3.4/-4.3/-8.2	-2.4/-2.0/-5.2/-4.6				A. Ransick & T. Minokawa
	Hox11/13b MASO		-3.0/-2.18/-2.52	(-2.21/-2.11/NS[24 h])(-1.9/-3.34/-2.19[27 h])+1.9/NS		NS		C. Arenas-Mena & I. Peter
	Soxb1 MOE26		NS,NS	-2.9,-3.4				L. Chen
	Tgif MASO		NS/NS/NS/NS	(NS/-1.74/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		-1.66/NS/NS/NS	(NS/NS/-2.87/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS	(NS/-1.75/NS[24 h])(NS/NS/NS[27 h])				I. Peter
Brn1/2/4	Otxb1/2 MASO				NS	-1.7/NS/-2.5/-1.7/NS		C. Yuh
	Dac MASO		NS/NS	(NS/NS[24 h])(-3.06/NS[27 h])				I. Peter & J. Yun
	Tgif MASO		NS/NS	(NS/NS[24 h])(-2.48/-2.83[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/-2.47/-2.38[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS	(NS/NS/NS[24 h])(-1.73/-3.24/-2.19[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS	(NS/NS[24 h])(-2.14/-3.77[27 h])				I. Peter & J. Yun
	GataE MASO		NS/NS/NS	(NS/NS/NS[24 h])(-2.86/-1.74/-2.47[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS	(NS/NS[24 h])(-2.63/-2.6[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(-1.88/-2.72/-2.01[27 h])				I. Peter
	Otxa MASO		NS/NS/NS	(NS/NS/NS[24 h])(-1.66/-2.78/-2.82[27 h])				I. Peter
	SoxC MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/-2.05[27 h])				I. Peter
	OtxHD MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/-1.36/-2.03[27 h])				I. Peter
capk	Bra MASO1			-1.7				J. Rast
cyclophillin	Pmar1 MOE	+3.3		+5.5				P. Oliveri
	Pmar1-En	NS		+3.4				P. Oliveri
	Dri MASO	-2.6/-2.7	-3.6/NS/-1.8/NS/NS/NS	NS/NS/NS				G. Amore, Q. Tu, P. Oliveri & J. Yun
	Dri-En		-1.8/-2.4					G. Amore
	Gsc MASO38		-2.4,NS	NS/-1.9				G. Amore
	Soxb1 MOE26			-3.6,-7.3/-2.2,-1.7				L. Chen
	Soxb1-En			-3.9,-2.6				L. Vega & W. Chiu
	Ets1 MASO		-3.12,-3.03/NS/-1.84/NS/-2.17/-4.04	-3.02,-3.6/-3.25/NS/-2.39/-2.34/-2.56/-2.07				P. Oliveri, Q. Tu & J. Yun
	Alx1 MOE		-2.56,-2.46/NS	-2.81,-3.4/NS/NS				P. Oliveri
	Ets1 MASO + Alx1 MOE		-5.31,-5.22/-3.7	-5.47,-6.05/-3.69/-3.57				P. Oliveri
	Hex MASO		NS/NS/NS	NS/-1.91/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/-1.68	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
dac	Dac MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(+1.61/+1.64/NS/+1.67[27 h])				I. Peter & J. Yun
	Otxa MASO		NS/+1.97/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(NS/-1.64/NS[27 h])				I. Peter
delta	Cad MOE	-3.3/-3.9	-1.6/NS	NS/-1.9				A. Ransick & T. Minokawa
	Pmar1 MOE	+1.8/+3.2		+2.6/+2.6				P. Oliveri
	Pmar1-En	+1.8/+2.0		+3.1/+2.0				P. Oliveri
	Soxb1 MOE26	-3.7,-3.3	-1.8,-2.4	-2.3,-2.2/NS				L. Chen
	Tel MASO		+1.81/NS/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/NS/NS	+1.63/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS/NS	NS/+1.78/NS				Q. Tu, P. Oliveri & J. Yun
	N MASO		NS/-1.74/NS	(NS/NS/NS/-1.92[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS/NS	(-1.62/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Otxa MASO		NS/+1.82/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
dpt	Bra MASO1			-6.8				J. Rast
	DnN MOE8		-1.7					C. Calestani
	Elk-En5			-2.1,-2.2,-4.6				M. Arnone
	Krl MASO18, 26	-3.8/-3.8	NS/NS	-3.1/-2.8/-2.0,-1.6				C. Livi
	Gcm MASO		-2.6	-5.7/-3.6				A. Ransick
dri	Pmar1 MOE	+3.6		+6.7				P. Oliveri
	Pmar1-En	+2.4		+7.2				P. Oliveri
	Dri MASO20		NS/NS/NS/NS/NS	NS/NS/NS/NS/NS	-1.8/-4.5			G. Amore, Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-4.8,-3.6/-4.1/-3.1/-1.8/-3.88/-3.16/-4.26	-1.9/-2.9/NS/-2.94/-3.4/-2.91				P. Oliveri, Q. Tu & J. Yun
	Ets1 MASO42		-2.8/-3.6/-5.17,-5.83/-2.76/-3.4,-2.58/-4.86/-4.58/-2.58/-4.25	-1.7/-2.3/-3.57,-2.12/-2.32/-2.17,-2.97/-3.55/-4.46/-3.12/-2.51				P. Oliveri, Q. Tu & J. Yun
	Soxb1 MOE26		-3.0,-3.4	-2.9,-5.1				L. Chen
	Tbr MASO42		NS/NS/+1.6/+2.8/+2.0/NS/NS/NS	+2.1/NS/+2.0/+1.6/NS/NS				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Alx1 MOE		NS,NS/NS/-2.44,-1.62	NS,NS/+2.26/NS,NS				P. Oliveri
	Ets1 MASO + Alx1 MOE47		-1.85,-2.51/NS/-5.53,-4.7	-3.39,-1.93/NS/-4.41,-5.21				P. Oliveri
	Tgif MASO		NS/NS/NS/NS	NS/NS/NS/-1.74				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-1.83/NS/-2.17/NS/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
elk	Dac MASO		+2.49/+2.24/+1.52/+1.46	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS/NS[24 h])(NS/-3.42/NS/NS/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-2.0/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		+1.51/NS/+1.72/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-2.06/NS/NS[27 h])				I. Peter & J. Yun
	Myc MASO		+1.43/NS/NS/+2.49	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		NS/+2.59/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(NS/-1.6/NS[27 h])				I. Peter
endo16	Otx-En	-1.6	-4.2	-3.1/-4.3/-6.6				A. Ransick & T. Minokawa
	GataE MASO		NS/NS/-2.6/NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])-2.8,-3.5/-2.7,-1.8	-2.3			P. Y. Lee, C. Yuh, I. Peter & J. Yun
	Hox11/13b MASO		-2.48/-1.75/NS	(NS/NS/-2.73[24 h])(NS/NS/-1.86[27 h])NS/+1.6/+2.3			NS	C. Arenas-Mena & I. Peter
	Krl MASO18,26		-2.59/-2.57/NS/NS	(NS/NS/NS/-1.6[24 h])(NS/-2.01/NS/NS[27 h])-4.0,-3.3/-2.5,-2.5/NS				C. Livi, L. Chen, I. Peter & J. Yun
	Cad MOE10	-2.9/NS	-6.2/-2.3	-5.2/-2.2				A. Ransick & T. Minokawa
	FoxA MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])		-3.9,-2.7		K. Young, P. Oliveri, I. Peter & J. Yun
	N MASO		-1.71/NS/-1.46	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])	-1.7 (29 h)			C. Calestani, I. Peter & J. Yun
	Soxb1 MOE26		-4.5,-5.7	-7.6,-9.9				L. Chen
	Blimp1b MASO		NS/-3.97/-2.02/NS/-3.26	(-2.54/NS/-3.27/NS/-3.8[24 h])(NS/NS/-3.78/-3.88/-1.9[27 h])				I. Peter & J. Yun
	Bra MASO		-1.82/-2.22/-2.13/-2.4	(-2.01/NS/NS/NS[24 h])(NS/NS/-1.86/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/-2.12/-2.93/-2.14	(NS/-1.97/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS	(NS/NS/-1.86[24 h])(-2.16/-1.78/NS[27 h])				I. Peter
	OtxHD MASO		-1.99/-1.75/NS	(-2.03/NS/-2.08[24 h])(NS/NS/-1.97[27 h])				I. Peter
ephx	Bra MASO1			-3.8				J. Rast
erg	Hex MASO		-2.16/NS/-1.94	NS/NS/-2.83				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		-1.86/-1.77/-1.73/-2.25	-1.75/-1.99/-2.46/NS				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		NS/-1.55/-2.79	-2.19/NS/-3.19				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/-2.22/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-1.64/NS/-1.69/NS	NS/NS/NS/-1.76				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/-2.37/NS/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
ets1	Pmar1 MOE	NS		+5.4				P. Oliveri
	Pmar1-En	NS		+4.5				P. Oliveri
	Soxb1 MOE26	NS,NS	-2.0,-1.9	-2.1,-2.1				L. Chen
	Snail MASO48			NS/NS,NS/NS				S. Wu & D. McClay
	FoxN2/3 MASO		NS/+2.71/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/+1.8/NS/NS	NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/+3.33/NS	NS/NS/+1.84				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		+2.85/NS/+3.47/NS/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
eve	Blimp1b MASO	-2.3,-3.0	-1.6,-1.7,-2.7,-2.3	NS/NS/NS				C. Livi, I. Peter & J. Yun
	Blimp1b-En	NS	-4.4,-4.3	-2.8,-4.3/-5.3				C. Livi
	Cad MOE	-6.3,-4.9/-3.9	-5.2,-4.0/-3.1	-5.5,-4.3/-4.6				A. Ransick & T. Minokawa
	Otx-En12			-2.9/NS				A. Ransick & T. Minokawa
	Soxb1 MASO26	-2.0/NS,-2.0,-1.8/NS/-2.7		-2.1/NS	NS			C. Livi, J. Rast & K. Young
	Hox11/13b MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])NS/+1.9				C. Arenas-Mena & I. Peter
	Soxb1 MOE26, 41	-2.1,-1.9	NS,-3.0	-4.1,-4.2				L. Chen
	Eve MASO	+2.8/NS/+3.45/+3.31	+2.0/NS/+2.58/+1.63/+2.39	(NS/+1.67/NS[24 h])(NS/NS/+1.64[27 h])NS/+2.2				A. Ransick, C. Livi & I. Peter
	Pmar1 MOE			-4.7				P. Oliveri & L. Vega
	Cad MOE			-3.7				P. Oliveri & L. Vega
	Pmar1 MOE + Cad MOE			-2.2				P. Oliveri & L. Vega
	Pmar1-En + Cad MOE			-6.7				P. Oliveri & L. Vega
	Pmar1-En			-7.9				P. Oliveri & L. Vega
	Brn1/2/4 MASO					-5.7/NS		C. Yuh
ferritin	Hox11/13b MASO			NS/NS/+2.1			NS	C. Arenas-Mena
ficolin	Bra MASO1			-1.7				J. Rast
	Pmar1 MOE	+4.0		+5.9				P. Oliveri
	Pmar1-En	NS		+3.1				P. Oliveri
	Dri MASO	-3.6/NS/-2.7,-4.6	NS/NS/-1.8/-2.5/NS/NS/NS	NS/NS/NS				G. Amore, Q. Tu, P. Oliveri & J. Yun
	Dri-En		-4.6/-3.0					G. Amore
	Hnf6 MASO		-2.9/-3.9/-3.2/-3.4					O. Otim & G. Amore
	Gsc MASO38		-2.9/-2.4	-2.2/-2.0				G. Amore
	Ets1 MASO		-2.56,-2.22/-2.77/-3.33/-1.81/-1.57/-2.36	-3.7/-2.0/-2.32,-3.62/NS/NS/-2.14/-3.92/-2.85				P. Oliveri, Q. Tu & J. Yun
	Soxb1 MOE26			-2.2,-4.2/-1.8				L. Chen
	Soxb1-En			-5.0,-3.6				L. Vega & W. Chiu
	Alx1 MOE		NS,NS/+1.69	NS,-2.13/NS
	Ets1 MASO + Alx1 MOE		-5.0,-4.66/NS	-2.42,-3.73/-2.57				P. Oliveri
	Hex MASO		-2.99/NS/-2.68	NS/NS/-3.91				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/-2.08/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	SoxC MASO		-1.68/NS	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS	-1.64/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-2.46/NS/NS	NS/NS/-2.08				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-3.31/-1.66/-5.47/NS/-1.73	NS/-1.79/-1.86/NS/NS				Q. Tu, P. Oliveri & J. Yun
foxa	GataE MASO		-2.1,-1.6/NS/NS,-1.8/-2.34/NS/NS/-2.35	(NS/-1.79/NS/NS[24 h])(NS/-1.57/-2.81/-2.24[27 h])-2.9,NS,-2.0/-3.4,-3.1/-2.6				P. Y. Lee, I. Peter & J. Yun
	FoxA MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])+2.3/NS,+1.6/+2.1	NS,+1.8	NS		P. Oliveri, I. Peter & J. Yun
	Cad MOE	NS,-2.0,NS/-2.2	NS,-4.1,-4.6/-2.1	-2.6,-5.0,-4.6/-4.9/-1.8				A. Ransick, T. Minokawa & C. Livi
	Dri MASO2		NS/NS/NS	NS/NS/-2.47/-2.41/NS	-2.3/-2.0/-2.0/-2.0/-3.0/-2.0/-2.0			G. Amore, Q. Tu, P. Oliveri & J. Yun
	GataC MASO			-2.7				P. Oliveri & J. Rast
	DnN MOE3		-2.5/NS					C. Calestani
	Elk-En4			-3.0,-3.7,-4.7				M. Arnone
	Gsc MASO2			NS/NS	-3.2/NS/-3.0/-3.0/-3.8/-3.0			G. Amore
	Otx-En		NS/NS/-2.8	-3.3/NS/-4.1/-2.8				A. Ransick & T. Minokawa
	Hox11/13b MASO		NS/-2.4/-1.64	(-2.64/-2.53/-1.92[24 h])(-1.88/NS/-2.48[27 h])+1.6/+1.6		NS		C. Arenas-Mena & I. Peter
	Soxb1 MOE26		NS,-5.1	-5.0,-5.4				L. Chen
	Brn1/2/4 MASO					-4.4/NS/-3.7		C. Yuh
	Ets1 MASO49		NS/-1.81/NS/-2.86	-1.78/-1.76/-1.88/-5.36				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-2.64/-2.63/NS/NS/NS/NS	(-4.1/-2.72/NS/-1.95/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Erg MASO49		-2.47/-1.75/-2.02/NS/-2.95	-2.28/-3.62/-2.59/-2.29/NS				Q. Tu, P. Oliveri & J. Yun
	Dac MASO		NS/NS/NS/NS	(-3.13/NS/NS/-2.14[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/-2.2/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		-1.75/NS/NS/NS	(NS/-2.61/-1.69/-1.48[24 h])(NS/-1.48/NS/-2.11[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/-2.39/NS/NS/NS	(-1.5/NS/NS/NS/-2.67[24 h])(-3.28/NS/-1.49/-1.9/-1.94[27 h])				I. Peter & J. Yun
	Krl MASO		NS/-2.29/NS/NS	(-2.03/-1.67/NS/NS[24 h])(NS/-1.67/NS/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS	NS/NS/+1.78	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	OtxHD MASO		-1.62/NS/NS	(-2.29/NS/NS[24 h])(NS/-2.24/NS[27 h])				I. Peter
foxb	Blimp1b-En27		-5.0	-5.7				C. Livi
	GataE MASO		-2.8/-2.4/-3.4,-2.4/NS,+3.7/NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/+1.75[27 h])-6.4,-4.4/-4.8,-5.2				P. Y. Lee, I. Peter & J. Yun
	FoxA MASO		NS/NS	(NS/NS[24 h])(NS/NS[27 h])NS,+1.9				P. Oliveri, I. Peter & J. Yun
	Cad MOE17		NS	-5.1/-3.3/-3.8				A. Ransick, T. Minokawa & C. Livi
	GataC MASO			-1.928				P. Oliveri & J. Rast
	Otx-En12			-6.4				T. Minokawa
	Eve MASO	NS	NS/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])-5.3				A. Ransick & I. Peter
	FoxB MASO				+3.2/+4.1			T. Minokawa
	Pmar1 MOE			+5.7				T. Minokawa
	Pmar1-En			+4.9				T. Minokawa
	Alx1 MASO		-3.2,-2.0/-3.2/NS/NS/NS	-5.1,-4.7/-3.6/-1.97/-2.33/-4.83				P. Oliveri, Q. Tu & J. Yun
	Ets1 MASO		NS/NS/NS/NS	-11.5,-10.9/-4.2/-3.97,-4.71/-9.81/-3.1/-2.24/-4.07/-6.87/-4.75				P. Oliveri, Q. Tu & J. Yun
	Tbr MASO33		-5.3/-2.6/NS/NS/NS	-4.9,-5.0/-2.7/-3.64/-2.59/-3.95				P. Oliveri, Q. Tu & J. Yun
	Soxb1 MOE26		-2.4,-2.3	-3.2,-3.4				L. Chen
	Alx1 MOE			-1.95,-2.68/NS/NS				P. Oliveri
	Ets1 MASO + Alx1 MOE47			-2.88,-3.62/-7.5/-4.03				P. Oliveri
	Dri MASO		NS/NS/NS	-2.57/-2.86/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS/NS	NS/-7.74/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS/NS/NS/NS	(NS/-2.82/-2.17/NS/-1.84/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Erg MASO		NS/NS/NS/NS/NS	NS/-4.43/-3.63/NS/+2.48				Q. Tu, P. Oliveri & J. Yun
	Bra MASO		NS/NS/NS/NS	(-2.38/-3.31/-2.1/-2.88[24 h])(-1.41/-3.89/NS/NS[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/-2.02/-1.67/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/NS	(-3.7/-1.62/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(NS/-2.84/-2.64/-2.07[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS	(-4.57/NS/-1.76[24 h])(NS/NS/-3.73[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/-2.76/-1.73	(NS/NS/-2.19[24 h])(NS/NS/NS[27 h])				I. Peter
	OtxHD MASO		-2.96/-2.85/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
foxG	Dac MASO		NS/NS/-1.65	(-1.61/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter & J. Yun
	Tgif MASO		NS/NS/NS	(NS/NS/-1.84[24 h])(NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS	(-2.13/NS/-2.13[24 h])(-2.04/NS/-3.43[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/-1.8[24 h])(NS/NS/NS[27 h])				I. Peter
	OtxHD MASO		NS/-2.92/NS	(-2.7/NS/-2.46[24 h])(NS/-1.3/-2.08[27 h])				I. Peter
foxN2/3	Ets1 MASO		-1.78/NS/NS/NS	NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS/NS	-1.82/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS/NS/NS/NS/NS	(-1.74/NS/NS/-1.88/NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Blimp1b MASO		NS/NS/NS/NS/NS	(-2.09/NS/-1.71/NS/NS[24 h])(NS/-2.95/NS/-1.42/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		NS/+2.04/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Hox11/13b MASO		NS/NS/NS	(NS/NS/-2.01[24 h])(-1.62/NS/-1.75[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/-1.91[24 h])(NS/-1.94/NS[27 h])				I. Peter
foxO	Hex MASO		NS/NS	-1.91/-3.31				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/NS/NS/-1.81	NS/NS/-1.87/-1.92				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS	NS/-2.04/-2.5/-1.94				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/NS/NS	NS/-1.71/NS				Q. Tu, P. Oliveri & J. Yun
	Dri MASO		NS/NS/NS	-1.89/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/-1.94/NS/-1.84/-3.59	NS/-3.62/-2.95/-2.32/NS				Q. Tu, P. Oliveri & J. Yun
foxP	Tgif MASO		NS/NS/NS/NS	(NS/-1.98/NS/NS[24 h])(NS/NS/NS/-2.23[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/NS/NS/-1.89/NS[24 h])(-2.04/NS/NS/NS[27 h])				I. Peter & J. Yun
	Dac MASO		-1.69/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		-2.45/-1.6/NS/-1.41	(NS/-2.39/NS/NS[24 h])(NS/-2.49/NS/-1.71[27 h])				I. Peter & J. Yun
	GataE MASO		NS/NS/NS/NS	(NS/NS/-1.64/NS[24 h])(-1.74/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/-1.75/NS[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(-1.81/NS/NS[27 h])				I. Peter
fvmo134	DnN MOE7	-1.6	-4.2/-3.5/-2.5/-2.6					C. Calestani
	Gcm MASO			-4.2				A. Ransick
	N MASO		-2.2		-1.7 (29 h)	-3.6		C. Calestani
	GataE MASO			-3.5/-1.9,-2.1				P. Y. Lee
fvmo234	DnN MOE	NS	-2.5/-2.5					C. Calestani
	N MASO		-1.9		-1.8 (29 h)	-2.6		C. Calestani
fvmo334	DnN MOE	-2.6	-2.2/-3.2					C. Calestani
	N MASO		-2.4		-2.0 (29 h)	-3.1		C. Calestani
G-cadherin48	Pmar1 MOE			-3.45,NS/-3.48				S. Wu & D. McClay
	Pmar1 MOE + Snail MASO			NS,NS/NS				S. Wu & D. McClay
gatac	Cad MOE31		-2.4/NS	-6.4/-3.6/-4.9				A. Ransick, T. Minokawa & C. Livi
	Elk-En			-6.0,-5.2,-5.7				M. Arnone
	Otx-En21			-2.1/-3.3				A. Ransick & T. Minokawa
	GataE MASO14		NS/NS/NS/NS/NS/NS/NS/NS/NS	(+1.69/NS/NS/NS[24 h])(NS/+2.17/+2.74/+2.2[27 h])-2.2,-2.5/NS,NS/-2.4,-2.5				P. Y. Lee, I. Peter & J. Yun
	Dri MASO49		-2.1/-2.3/NS/NS	-2.87/-2.88/-2.43	NS/NS			G. Amore, Q. Tu, P. Oliveri & J. Yun
	N MASO30		(NS/NS/NS[18 h])(-2.77[21 h])-2.6	(-2.77/-2.34/-3.17/-2.91/-5.4[24 h])(-2.37/-4.69/-2.87/-4.11/-2.67[27 h])	NS (29 h)	NS		C. Calestani, Pei-yun Lee, I. Peter & J. Yun
	GataC MASO			+3.1,+3.7/NS				P. Oliveri
	Hnf6 MASO		-2.5/-3.0/-2.8/-6.2/-3.1/-3.4		+2.0/+3.0			G. Amore & O. Otim
	Gcm MASO32		-2.2	-2.5				A. Ransick
	Soxb1 MOE26			-2.9,-2.9				L. Chen
	Gsc MASO37			-3.6/-2.9				G. Amore
	MutantSu(H) MOE		NS	-2.7	NS			Pei-yun Lee
	FoxA MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])NS/+2.2		NS/NS		P. Oliveri, I. Peter & J. Yun
	Ets1 MASO		NS/NS/NS/NS	NS/-1.81/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS	NS/-2.91				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/NS	NS/-3.08/-2.96/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/-1.78/-2.47/NS/-1.83[24 h])(NS/NS/NS/-2.27/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(+1.87/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/-3.63/-2.27	(NS/NS/-1.89[24 h])(NS/NS/-2.04[27 h])				I. Peter
	OtxHD MASO		-4.09/-3.73/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
gatae	Cad MOE	NS/NS	-5.1/-3.1	-4.7/-3.6/-3.1				A. Ransick, T. Minokawa & C. Livi
	DnN MOE		-2.4/NS					C. Calestani
	Otx-En		-3.3,-2.2/-2.8,-3.0/-3.2	NS/NS,-2.4/-2.4/-4.1/-2.4				A. Ransick & T. Minokawa
	Soxb1 MOE26		-1.6,-3.8	-4.1,-4.2				J. Rast & K. Young
	Soxb1-En			-6.0,-3.5				L. Vega & W. Chiu
	FoxA MASO		NS/NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])NS/NS		-2.8,-1.6/-2.5/-8.5		P. Oliveri, I. Peter & J. Yun
	Hnf6 MASO				NS/NS/NS/NS/NS	-2.1/-2.6/-2.7/NS/NS		G. Amore & O. Otim
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/-2.72[24 h])(-2.3/-2.41/-1.98[27 h])-2.6				A. Ransick & I. Peter
	Hox11/13b MASO		-1.74/NS/NS	(-1.63/NS/-2.62[24 h])(-1.7/-2.16/-1.7[27 h])+2.4/+1.7			NS	C. Arenas-Mena & I. Peter
	N MASO		(NS/NS/NS[18 h])(NS[21 h])	(NS/NS/NS/NS/NS[24 h])(NS/NS/NS/NS/NS[27 h])	-2.84 (37 h)			Pei-yun Lee, I. Peter & J. Yun
	MutantSu(H) MOE		-2.2/NS/-1.68/NS/NS/-2.52	NS/NS/NS/-1.88/NS/NS	NS/NS/NS/NS/NS/NS			Pei-yun Lee
	Dac MASO		NS/-1.51/NS/-2.73	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Tgif MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/-1.63[27 h])				I. Peter & J. Yun
	Bra MASO		-3.29/-3.11/NS/-2.02	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		-2.2/NS/NS/NS	(NS/NS/NS/NS[24 h])(-1.8/NS/NS/NS[27 h])				I. Peter & J. Yun
gcm	Cad MOE	-6.3,-5.1,-5.2/-3.3	-5.2,-6.1,-4.6/-4.3	-5.0,-5.7/-5.5				A. Ransick & T. Minokawa
	DnN MOE		-3.5/-2.1,-3.1					C. Calestani
	Gcm MASO	-1.9		-2.0/-3.5				A. Ransick
	Elk-En			-4.3,-3.0,-6.4				M. Arnone
	N MASO		(-5.36/-5.03/-4.29[18 h])(-3.68[21 h])-2.4	(-3.69/-4.28/-5.75/-4.61/-5.39[24 h])(-4.09/-4.43/-3.86/-4.74/-6.32[27 h])	-2.6/-2.3 (29 h)/-4.93 (37 h)	-2.4		C. Calestani, Pei-yun Lee, I. Peter & J. Yun
	FoxA MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])NS,NS/+3.2/NS	+2.2,+1.6/+3.2,+3.0	NS/NS		P. Oliveri, I. Peter & J. Yun
	Soxb1 MOE26	NS	-3.5,-5.1	-4.1,-3.2				L. Chen
	Hnf6 MASO				+2.2/NS			G. Amore & O. Otim
	MutantSu(H) MOE		-2.6/-4.0	-3.3/---	-3.4/-4.0			Pei-yun Lee
	Tgif MASO		NS/NS/NS/NS/NS/NS/NS/NS	(NS/NS/NS/-1.72/NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Blimp1b MASO		NS/-3.2/NS/NS/NS	(NS/-1.6/NS/NS/-3.93[24 h])(NS/NS/NS/-1.86/-3.73[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/-3.9[24 h])(NS/NS/-2.05[27 h])				I. Peter
	Eve MASO	NS/-3.65	NS/NS	(NS/NS/NS[24 h])(-2.23/NS/NS[27 h])				I. Peter
gsc	Dri MASO	-5.0/-7.0	-7.0/-8.6/-4.0/-2.9/NS/-1.88/-1.7	-3.23/-3.96/-2.15	-2.6/-4.5			G. Amore, Q. Tu, P. Oliveri & J. Yun
	Dri-En		-3.6/-2.7					G. Amore
	Alx1 MASO		-3.6,-2.5/NS/NS/NS/NS/NS	NS/NS/NS/NS/NS				P. Oliveri, Q. Tu & J. Yun
	Soxb1 MOE26		-4.0,-9.1	-6.7,-4.8				L. Chen
	Soxb1-En			-3.3,-1.9				L. Vega & W. Chiu
	Pmar1 MOE			-13.3				P. Oliveri & L. Vega
	Cad MOE			-6.5				P. Oliveri & L. Vega
	Pmar1-En			-6.6				P. Oliveri & L. Vega
	Hnf6 MASO		-6.1/-4.9/-6.0					G. Amore & O. Otim
	GataE MASO45			-5.0,-4.8/-4.0,-4.1				P. Y. Lee
	Tel MASO		NS/NS/-1.95	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/NS/NS	NS/-2.15/NS				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		-1.64/NS	NS/NS				Q. Tu, P. Oliveri & J. Yun
	SoxC MASO		-9.71/NS	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO49		NS/NS/-2.88/NS	-3.0/-2.79/-3.19/-3.25				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO49		NS/NS/-2.71/-2.02	-2.48/-3.1/NS/-8.93				Q. Tu, P. Oliveri & J. Yun
	Erg MASO49		-2.68/NS/-2.78/-2.01/-2.46	NS/-2.98/-2.41/-1.76/NS				Q. Tu, P. Oliveri & J. Yun
hex	Ets1 MASO		-4.02/-5.21/-2.61/-3.8	NS/-1.86/-3.39/-1.99				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/-1.86	NS/-1.88/-2.19				Q. Tu, P. Oliveri & J. Yun
	Dri MASO		NS/NS/NS	-1.77/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		-1.65/-2.1	NS/-3.85				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-1.63/NS/-4.19/-1.71/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
hh	FoxA MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(-4.52/-8.1/-6.0/-3.09[27 h])	-2.5/-2.3	-3.3/-2.7		P. Oliveri, I. Peter & J. Yun
	Tgif MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-1.72/-2.15/-2.01[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS/NS[24 h])(-4.7/NS/-3.0/-1.45/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(-2.06/-8.5/NS/-1.67[27 h])				I. Peter & J. Yun
	GataE MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(-3.8/-2.19/-5.02/-3.54[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-5.76/-1.87/-3.21[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(-2.53/NS/NS/-2.67[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-2.2/-3.44/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/NS[24 h])(-3.74/-2.91/NS[27 h])				I. Peter
	Otxa MASO		NS/NS	(NS/-1.67[24 h])(NS/NS/NS[27 h])				I. Peter
	Eve MASO	NS	NS/NS	(NS/-1.96[24 h])(NS/-3.25/NS[27 h])				I. Peter
	OtxHD MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/-3.53/-3.75[27 h])				I. Peter
hnf1	GataE MASO		-2.03/-2.48/NS/-3.74	(NS/NS/-3.47/-2.29[24 h])(-3.48/NS/-3.44/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/-3.42/NS/-2.74	(-2.1/-2.5/-1.54/-2.37[24 h])(-3.7/-1.85/-2.08/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/-1.97	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Tgif MASO		-2.11/NS/NS/-2.26	(NS/NS/NS/-1.65[24 h])(NS/NS/NS/-2.09[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/-2.34/-2.89	(-1.41/NS/-2.92/NS[24 h])(-2.21/NS/NS/NS[27 h])				I. Peter & J. Yun
	N MASO		+1.69/NS/NS	(+2.63/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Dac MASO		-2.5/NS/-3.28/NS	(NS/NS/-2.5/NS[24 h])(NS/NS/-1.91/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		-3.86/-2.11/NS/NS/NS	(NS/-1.95/-1.5/NS/NS[24 h])(-1.81/-2.74/NS/-1.63/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		-3.68/NS/-3.4	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Hox11/13b MASO		NS/NS/NS	(-1.63/NS/-2.43[24 h])(-2.28/-1.97/-1.72[27 h])				I. Peter
	Eve MASO	NS/NS	-2.98/-3.81/NS	(-2.44/-1.96/-3.34[24 h])(-3.19/-3.05/-2.26[27 h])				I. Peter
	OtxHD MASO		NS/-2.25/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Hnf1 MASO			(NS/NS/NS[24 h])(NS/+1.45/+1.93[27 h])				I. Peter
hnf6	Tbr MASO		NS/NS	NS,+1.9/NS/NS				P. Oliveri, K. Young, Q. Tu & J. Yun
	Tgif MASO49		NS/NS/NS/NS/NS	(NS/-2.67/-2.19/-1.95/NS[24 h])(NS/-1.7[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Ets1 MASO		NS/NS/NS/NS	NS/NS/-2.09/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS	-1.85/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/-3.46/-1.66	NS/-1.81/-1.76/-1.93/NS				Q. Tu, P. Oliveri & J. Yun
	Dac MASO		+1.68/NS	(NS/NS[24 h])(NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/-2.22	(NS/NS[24 h])(NS/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		+2.4/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Eve MASO	NS	NS/+1.6	(NS/NS/-1.87[24 h])(-2.93/-2.5/NS[27 h])				I. Peter
	Hnf1 MASO			(NS/NS/NS[24 h])(NS/NS/+1.61[27 h])				I. Peter
hox11/13b	Blimp1b-En	-7.6	-6.2	-3.2				C. Livi
	Cad MOE	-5.4	-5.6/-2.7	-5.2/-3.1				A. Ransick & T. Minokawa
	Otx-En		-4.8/-4.3/-6.5	-3.0/-4.3/-6.6/-8.8				A. Ransick & T. Minokawa
	Soxb1 MOE26	-2.4,-2.3	-1.8,NS	NS,NS/NS				L. Chen
	Eve MASO	NS/NS/NS	-1.8/-1.8/NS/NS/NS	(-1.89/-1.62/-2.48[24 h])(-1.95/-2.0/-2.04[27 h])-2.8/-2.1				A. Ransick, C. Livi & I. Peter
	GataE MASO		NS/NS/NS	(+1.79/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/+2.17[27 h])				I. Peter & J. Yun
	N MASO		NS/+1.77/NS	(NS/-1.77/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(+1.62/+1.52/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/+1.42/+1.98[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/NS	(NS/NS/+1.77/+1.98[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(+2.31/+2.82/NS[24 h])(+2.38/+2.59/+1.22[27 h])				I. Peter
hsp70	Hox11/13b MASO			NS/+1.6				C. Arenas-Mena
jun	Dri MASO		NS/+1.66/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/-5.32/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
krl	Cad MOE	-9.9,-10.8		-4.9				P. Oliveri & K. Young
	Pmar1 MOE	NS,NS		-2.1,-2.5				P. Oliveri & K. Young
	Pmar1-En	NS,NS		NS,NS				P. Oliveri & K. Young
	Pmar1 MOE + Cad MOE	-6.3,-7.4		-2.5				P. Oliveri & K. Young
	Pmar1-En + Cad MOE	-6.1,-5.2		NS				P. Oliveri & K. Young
	Hnf6 MASO		NS/-2.1/NS/-1.9/NS		+2.9/+3.5/+2.0/+3.4/+5.2			G. Amore & O. Otim
	Soxb1 MOE26	-2.9,-2.9	-3.8,-4.0	-3.3,-3.1/NS				L. Chen
	Tbr MASO		NS/NS	+2.66/NS				Q. Tu, P. Oliveri & J. Yun
	Dri MASO		NS/NS/NS	NS/+1.97/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS/NS/NS/NS	(+2.54/NS/NS/NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Alx1 MASO		NS/NS/NS	+2.21/+1.81/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/NS	+2.41/NS/NS/NS/+2.36				Q. Tu, P. Oliveri & J. Yun
	GataE MASO		NS/NS/NS/NS	(NS/+2.46/+2.85/+1.68[24 h])(+4.58/+2.82/+2.9/+1.43[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/-1.65/NS/NS/NS	(NS/NS/NS/NS/+2.01[24 h])(+1.82/+2.64/+1.6/+2.0/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/+1.48/+2.97/+1.79[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(NS/NS/+1.94/NS[24 h])(NS/+1.82/+3.03/+3.01[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/+2.03/NS/+2.46[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(-2.51/-1.65/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	FoxA MASO		NS/NS/NS/NS	(NS/+1.6/NS/NS[24 h])(+2.15/+1.56/+1.94/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(-1.77/NS/NS[27 h])				I. Peter
	Hox11/13b MASO		NS/NS/NS	(-1.71/NS/-1.79[24 h])(NS/NS/-1.64[27 h])				I. Peter
	Otxa MASO		NS/NS/NS	(NS/+1.77/NS[24 h])(NS/NS/+2.54[27 h])				I. Peter
lim1	GataE MASO		-1.6/-2.3,-1.9/NS,NS/NS,NS	-2.6,-2.2/-2.3,-2.3				P. Y. Lee
	Cad MOE	NS	-2.5/NS	-5.0/NS				A. Ransick & T. Minokawa
	Elk-En6			-6.3,-3.7,-6.5				M. Arnone
	Soxb1 MASO26	-2.9		-2.3	NS			C. Livi
	Otx-En		-2.5/NS	-3.3/-5.4				A. Ransick & T. Minokawa
msp130	Dri MASO		-3.6/-5.1/-2.1/-2.4/-2.0/-2.5/-3.0/NS/-1.95/NS	NS/NS/NS				G. Amore, Q. Tu, P. Oliveri & J. Yun
	Cad MOE19			-5.3				C. Livi
	Dri-En		-3.6/-1.9					G. Amore
	Pmar1 MASO	+3.1		+6.4				P. Oliveri
	Pmar1-En	+1.6		+4.7				P. Oliveri
	Krl MASO26	-2.423,-2.123/-4.8,-3.3/-4.9,-2.8	-2.2/-1.7,-2.7/NS	-1.9,-2.7/NS				J. Rast & K. Young
	Hnf6 MASO		-2.8/-2.2/-2.7/-3.0/-3.4/NS/-1.8			NS/NS		O. Otim & G. Amore
	FoxB MASO			-1.7	-2.0			T. Minokawa
	Ets1 MASO		-3.3/-4.3/NS/-5.63/-8.84/-5.66/-3.42/-6.02	-4.3/-5.05/-2.48/-5.42/-4.58/-6.4/-4.81				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Alx1 MASO43		-2.9,-3.1/-2.4/NS/-3.73/-2.41/-4.09	-1.8/-2.1/-3.07/-2.33/-4.49				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Gsc MASO38		-3.2,NS	-2.2/-3.7				G. Amore
	Soxb1 MOE26			-8.4,-8.9/-2.8,-1.6				L. Chen
	Alx1 MOE		NS/NS	NS/NS				P. Oliveri
	Ets1 MASO + Alx1 MOE47		NS/-3.91	-3.23/-4.54				P. Oliveri
	Hex MASO		-4.08/-1.57/-3.33	-2.0/NS/-4.88				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-2.87/-1.84/-2.62	NS/-2.92/-2.57				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		NS/NS	-1.73/NS				Q. Tu, P. Oliveri & J. Yun
	SoxC MASO		-2.02/NS	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-4.86/-2.0/-6.21/-3.07/-2.52	NS/-3.25/-2.79/-1.61/NS				Q. Tu, P. Oliveri & J. Yun
msp130-like	Bra MASO1			-4.3				J. Rast
	Pmar1 MOE	+3.2		+5.8				P. Oliveri
	Pmar1-En	+2.4		+4.9				P. Oliveri
	Alx1 MASO		-4.7/-3.1/-3.5/NS	NS/NS				P. Oliveri
	Ets1 MASO		-2.3/-5.58,-5.29/-2.08	-2.8/-5.42,-5.6/-13.23/-3.47				P. Oliveri
	Alx1 MOE		-2.29,-1.99/NS	-2.38,-2.55/NS/NS				P. Oliveri
	Ets1 MASO + Alx1 MOE47		-6.35,-6.06/-2.52	-5.72,-5.89/-5.77/-3.99				P. Oliveri
	Hex MASO		-3.05/-1.67	NS/-4.14				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		-8.56/-8.38/-3.29/-6.36	-6.39/-5.15/-7.49/-7.91				Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-4.4/-2.83/-3.95	-2.83/-2.11/-4.65				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-2.06/-1.69/NS/-1.85	-1.6/-2.21/-2.07/-1.72				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-2.07/NS/-2.6/-2.06/-2.2	NS/-1.61/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
msx	GataE MASO		NS/NS/NS/NS	(NS/NS/-3.51/-2.45[24 h])(-3.32/NS/-3.69/NS[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(-3.09/NS/-3.21/-1.69[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(+3.12/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(-1.53/-3.04/-1.79/NS[24 h])(NS/-2.0/NS/-1.62[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/-1.95/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		-1.94	(NS[24 h])(NS[27 h])				I. Peter
myc	Myc MASO		+1.6/NS/+1.95/NS	(+1.56/+1.52/NS/+1.71[24 h])(NS/+1.71/+2.09/+1.69[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS/NS[24 h])(-2.05/NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	GataE MASO		-1.48/NS/-1.84/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/-1.75[27 h])				I. Peter
not	GataE MASO		-1.9,NS/NS/NS,NS	-2.2,-2.1/-2.4,-2.3				P. Y. Lee
	Otx-En	-3.6	-5.0	-2.1/-3.3				A. Ransick & T. Minokawa
	GataC MASO			-1.7/NS				P. Oliveri & J. Rast
	Tgif MASO49		NS/NS/NS	-3.32/-2.16/-1.97				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/NS/NS/NS	NS/NS/-2.87/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/+1.74	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/NS	NS/NS/-1.72/NS/NS				Q. Tu, P. Oliveri & J. Yun
notch	GataE MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/-1.79/-1.53[27 h])				I. Peter & J. Yun
	N MASO		+1.87/NS/+1.49	(NS/NS/+2.49/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(NS/NS/NS[24 h])(NS/NS/-1.64[27 h])				I. Peter
	Otxa MASO		NS/+1.86/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
nrl	GataE MASO		+2.3,NS/+1.8,+2.7	+2.1,+1.6,NS/+2.3,+1.8				P. Y. Lee
	Bra MASO1			+2.4,+4.3				J. Rast
	Otx-En3		NS	+3.5				A. Ransick & T. Minokawa
	Tbr MASO		-2.2,-3.4,-3.4,-2.7/-1.8/-2.4/NS/NS/NS	NS/NS/+2.31/NS/NS				P. Oliveri, Q. Tu & J. Yun
	Alx1 MASO		-1.8/-2.7/NS/NS	NS/NS/NS/NS				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Pmar1 MOE	+2.4		+4.5				P. Oliveri & L. Vega
	Cad MOE	+3.6		+2.6				P. Oliveri & L. Vega
	Pmar1-En	+3.4		+2.3				P. Oliveri & L. Vega
	FoxN2/3 MASO		NS/-2.25/-2.01	NS/+1.91/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/-1.7/-1.82/+1.78	+1.57/+3.92/NS/+3.83				Q. Tu, P. Oliveri & J. Yun
	Tel MASO		NS/NS/-2.31	+1.75/+1.6/NS				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/+2.13/NS	+1.77/+3.66/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/NS/NS	NS/NS/+2.28				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/-2.4/NS/-2.09/-2.54	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
otx3	Blimp1b MASO	-3.8,-3.0	-1.8,-2.1,-2.3,-2.3					C. Livi
otxb1/2	Blimp1b MASO	-2.7,-2.1	-2.1,-1.9/NS/NS/-1.73/NS/NS/NS	(NS/NS/NS/NS/-1.67[24 h])(-2.12/NS/NS/NS/NS[27 h])-2.3/-2.7				C. Livi, I. Peter & J. Yun
	Blimp1b-En	-5.6	-4.6	-3.6				C. Livi
	GataE MASO		-2.5,-3.1/-3.6,-3.6/-1.86/NS/NS/NS	(-1.41/-1.74/-1.91/-1.49[24 h])(-1.65/-2.64/NS/-1.72[27 h])-1.8,NS,NS/-3.0,-3.7				P. Y. Lee, I. Peter & J. Yun
	Cad MOE	NS	+10.3/+1.7	NS/NS				A. Ransick & T. Minokawa
	Otx-En	-3.8/-3.7	-3.2/-4.1/-3.3	-2.1/-2.3/-3.2/-3.8				A. Ransick & T. Minokawa
	Tgif MASO		NS/NS/NS/NS	(NS/NS/-1.9/-1.63[24 h])(NS/-1.49/NS/-1.81[27 h])				I. Peter & J. Yun
	Dac MASO		NS/NS/NS/NS	(-2.13/NS/NS/-2.47[24 h])(-1.92/NS/-1.64/NS[27 h])				I. Peter & J. Yun
	N MASO		NS/+2.02/NS	(NS/+3.55/NS/NS[24 h])(+2.08/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/-3.05/-2.41/-1.82	(NS/-1.68/NS/NS[24 h])(-1.77/-1.48/NS/-2.07[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(-1.63/NS/NS/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		NS/NS/+2.05	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
pks	GataE MASO		-2.2/-3.2/-1.9	-3.4,-1.6,NS/-3.2,-3.6				P. Y. Lee
	Bra MASO1			-2.6				J. Rast
	DnN MOE7	-1.8	-3.3,-2.5/-2.7,-3.1					C. Calestani
	Elk-En7			-7.1,-5.2,-6.5				I. Arone
	Gcm MASO		-6.1/-7.2	-5.2/-3.3/-12.3/-7.8				A. Ransick
	N MASO		-2.6		-3.4 (29 h)	-3.1		C. Calestani
	DnN MOE				-2.1 (29 h)			C. Calestani
	Krl MASO		NS/NS	-2.1,-1.7				L. Chen
	FoxA MASO			+3.7		NS/NS		P. Oliveri
	Hex MASO49		-3.63/-2.14	NS/-4.69				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/-2.54/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	SoxC MASO		-2.61/NS	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS	NS/NS/-1.81/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO49		-4.86/NS/-7.53/-2.85/-2.29	NS/-2.61/-2.18/NS/NS				Q. Tu, P. Oliveri & J. Yun
pm27/sm27	Dri MASO	-3.2/-5.0	-4.0/-4.3/-2.3/-2.8					G. Amore
	Dri-En		-3.2/-2.3					G. Amore
	Pmar1 MOE	NS		+4.0				P. Oliveri
	Pmar1-En	NS		+2.7				P. Oliveri
	Gsc MASO38		-2.2/-3.3	-2.0/-3.0				G. Amore
	Hnf6 MASO		-5.8/-4.0/-3.5/-5.1/-5.3/-2.6/-4.0			NS		G. Amore & O. Otim
	Soxb1 MOE26			-7.8,-13.2/-2.5				L. Chen
	Ets1 MASO			-4.4/NS/-3.21,-5.18/-6.55				P. Oliveri & L. Vega
	Alx1 MOE			NS,-3.56/NS				P. Oliveri
	Ets1 MASO + Alx1 MOE47			-4.22,-6.18/-3.33				P. Oliveri
	Hex MASO		-2.52/NS/-2.44	NS/NS/-4.78				Q. Tu, P. Oliveri & J. Yun
	Tel MASO		-2.82/-3.51/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		-2.53/-3.27/-3.13/-4.36	-3.48/-4.74/-7.7/-4.72				Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-4.02/-1.98/-1.93	-1.97/-1.6/-4.22				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-2.03/-2.37/NS/NS	-2.53/-1.91/-2.58/-2.24				Q. Tu, P. Oliveri & J. Yun
	Dri MASO		-1.66/NS	-2.32/-2.09/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-3.49/-4.64/-8.2/-3.98/-4.08	-2.02/-4.53/-3.88/-2.54/NS				Q. Tu, P. Oliveri & J. Yun
pmar1	Cad MOE	-4.0 (6 h)/-3.0 (6 h)						A. Ransick & T. Minokawa
	Otx-En	-3.1,-2.9/-2.8						A. Ransick & T. Minokawa
six1/2	Gcm MASO			-2.07/-1.68/-2.23				S. Materna
sm30	Dri MASO		-6.2/-5.4/-5.6/-5.6		-7.5/-5.0/-6.0			G. Amore
	Dri-En				-6.2/-5.4/-5.6/-5.6			G. Amore
	Tbr MASO			-1.8				P. Oliveri & L. Vega
	Alx1 MASO			-2.5				P. Oliveri & L. Vega
	Hnf6 MASO35, 40				-3.2/NS/-2.1/-5.5/-4.1/-3.2/-4.0	-4.5/-6.0/-3.6/-2.7/-4.5		G. Amore & O. Otim
	Ets1 MASO			NS/NS				P. Oliveri
	Alx1 MOE			+2.57/+2.34				P. Oliveri
	Ets1 MASO + Alx1 MOE			NS/NS				P. Oliveri
sm50	Dri MASO22	NS/-3.0/-2.1/-4.8	NS/-2.5/-4.0/-4.8/-3.2/-2.2/-2.54/-2.61	-2.64/-2.46/NS	-4.0/-3.0/NS/-2.5	+4.0/+3.4		G. Amore, Q. Tu, P. Oliveri & J. Yun
	Dri-En22		-3.2/-2.3					G. Amore
	Bra MASO1			-2.2				J. Rast
	Pmar1 MOE1			+4.4/+2.3				P. Oliveri
	Pmar1-En11			+2.5/NS				P. Oliveri
	Eve MASO			-3.8,-3.5				A. Ransick
	Gsc MASO2, 38		NS,NS,-1.7	-3.2/-2.0	NS/-3.0,-3.0			G. Amore
	Hnf6 MASO		-2.3/-2.5/-2.8/-3.4/-2.5/-2.4/NS		NS/NS	NS		O. Otim & G. Amore
	Krl MASO26	-3.0,NS/-5.3,-4.2	-3.2/NS,-2.4	-4.1,-4.9/-1.7				K. Young & J. Rast
	Ets1 MASO		-1.9/-1.9,-2.01/-2.2/-3.04/NS/NS/-1.92/-4.92	-6.5/-4.6/-3.44,-5.29/-4.25/-4.98/-4.31/-4.16/-6.79/-3.83				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Alx1 MASO		-2.7,NS/NS/-2.88/NS/NS	-3.4/-2.0/NS/-2.09/NS/-4.51				P. Oliveri, L. Vega, Q. Tu & J. Yun
	Eve MASO			-3.5				A. Ransick
	Soxb1 MOE26			-4.5,-9.9/-3.0,-1.8				L. Chen
	Alx1 MOE		NS,NS/NS/NS	NS,-2.04/NS/-2.59				P. Oliveri
	Ets1 MASO + Alx1 MOE47		-2.37,-2.49/-2.38/-2.46	-3.98,-5.83/-5.01/-7.38				P. Oliveri
	Hex MASO		-2.07/NS/-2.23	-1.59/NS/-4.43				Q. Tu, P. Oliveri & J. Yun
	Tel MASO		-3.82/-1.96	-2.25/-1.81				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS	-2.03/-3.12/-2.13				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		NS/NS	NS/-1.79				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-3.29/-3.89/-2.1/-3.77/-4.0	-2.04/-5.18/-4.34/-2.62/NS				Q. Tu, P. Oliveri & J. Yun
Snail	Pmar1 MOE48			+2.99/NS,+2.03				S. Wu & D. McClay
	Alx MASO48			-2.54/-3.4,NS				S. Wu & D. McClay
	DN-Ets MOE48			NS				S. Wu & D. McClay
	Hex MASO		NS/NS	-2.22/-6.18				Q. Tu, P. Oliveri & J. Yun
	Dri MASO49		NS/NS/NS	-2.91/-5.65/-3.21				Q. Tu, P. Oliveri & J. Yun
	Tel MASO		NS/NS/NS	-6.17/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		NS/NS	NS/-8.57				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/NS/NS/NS	NS/-3.06/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS	NS/-2.36/NS/-2.05				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/NS	NS/-3.22/-5.74/NS/+2.19				Q. Tu, P. Oliveri & J. Yun
soxb1	Soxb1 MASO26	NS,NS/NS,NS/NS/+2.5/NS/+3.0,NS/NS,+2.0/NS (6 h)		+3.0,+3.4/+3.6,+3.3	+4.3,+4.3/+3.8,+3.9			C. Livi, J. Rast & K. Young
	Cad MOE			NS				P. Oliveri & K. Young
	Pmar1 MOE			-7.0				P. Oliveri & K. Young
	Pmar1-En			-4.4				P. Oliveri & K. Young
	Pmar1 MOE + Cad MOE			-5.9				P. Oliveri & K. Young
	Pmar1-En + Cad MOE			-4.2				P. Oliveri & K. Young
	Tgif MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/-1.63[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/+3.47/NS/NS	(NS/NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Krl MASO		+1.73/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
soxC	SoxC MASO		+1.8/+1.89/NS/+1.97/NS	(NS/NS/+1.49/+1.53/+1.61[24 h])(+1.7/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Ets1 MASO		-1.84/NS/NS/NS	NS/NS/-1.69/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/+1.7/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/NS/NS/NS/NS[24 h])(NS/-1.93/NS/NS/NS[27 h])				I. Peter & J. Yun
sutx	DnN MOE	NS		-2.7/-2.6/-2.9				C. Calestani
	Gcm MASO		-4.3	-6.7				A. Ransick
	N MASO		-3.1		NS	-4.6		C. Calestani
	Krl MASO		NS/NS	-1.7,NS,-3.2,-2.7				L. Chen
	GataE MASO			-4.2/-1.9/-1.6				P. Y. Lee
tbr	Bra MASO11			-1.8				J. Rast
	Pmar1 MOE	+2.0/NS		+5.9/+3.4				P. Oliveri
	Pmar1-En	+1.7/NS		+4.7/+2.6				P. Oliveri
	Tbr MASO		NS/NS/NS	NS/+1.76/+1.66				Q. Tu, P. Oliveri & J. Yun
tel	Tel MASO		+2.31/+3.78/+2.82	+2.63/+2.25/+2.93				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/+2.12/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		-1.65/NS/NS/NS	NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Hex MASO		NS/+1.89/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		+1.93/NS/+2.06/NS/NS	NS/NS/NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
tgif	Hex MASO		-2.28/-3.53/-2.85	NS/NS/-4.08				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		-1.67/-1.82/NS/-2.7	-2.0/-1.59/-2.51/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		-2.49/-1.93/-1.96/-1.41/NS/NS/-2.06	(-1.86/-3.07/NS/-1.88/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Tel MASO		NS/-2.39	NS/NS				Q. Tu, P. Oliveri & J. Yun
	Tbr MASO		-2.24/NS/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	SoxC MASO		-1.71/NS/NS/NS/NS	(NS/NS/NS/NS/NS[24 h])(NS/NS/NS[27 h])				Q. Tu, P. Oliveri, J. Yun & I. Peter
	Dri MASO		NS/-2.33/NS	NS/-1.76/NS				Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-2.33/NS/NS	NS/NS/NS				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		-3.36/-2.87/-2.13/-2.82/-3.08	NS/-3.73/-2.09/-2.21/NS				Q. Tu, P. Oliveri & J. Yun
	GataE MASO		NS/NS/NS/-2.31	(NS/NS/NS/NS[24 h])(-1.74/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		-1.53/-3.85/-1.53/-3.21	(-2.04/-3.43/-2.37/-2.31[24 h])(-3.15/-1.64/-1.55/-1.67[27 h])				I. Peter & J. Yun
	Krl MASO		NS/-2.05/-3.43/-4.12	(-1.62/NS/NS/-1.57[24 h])(NS/NS/NS/-1.94[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(-1.75/-2.65/-1.63/NS[24 h])(-1.79/-2.05/NS/-1.56[27 h])				I. Peter & J. Yun
	Dac MASO		-2.05/-1.45/NS/NS	(-2.79/NS/-2.0/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		-4.58/-1.41/NS/-3.61/-3.0	(-2.62/NS/-2.05/NS/-2.41[24 h])(-2.54/-2.49/NS/-1.81/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/NS	(-2.07/NS/-1.68[24 h])(-2.06/NS/-1.92[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/NS[24 h])(-1.88/-2.02/NS[27 h])				I. Peter
	OtxHD MASO		-1.67/NS/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
ui (via endo16)	Cad MOE9	-2.9	-6.2	-5.2				A. Ransick & T. Minokawa
	GataE MASO	-2.8,-3.5/-2.7,-1.8						P. Y. Lee
unc4.1	Tgif MASO50		NS/NS/NS/NS	(NS/-1.86/-1.87/-1.47[24 h])(NS/NS/NS/-2.25[27 h])				I. Peter & J. Yun
	GataE MASO		NS/NS/NS/NS	(NS/NS/-3.67/-2.47[24 h])(-3.04/NS/-4.41/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		NS/NS/NS/NS/NS	(NS/-1.41/NS/-2.16/-2.05[24 h])(-3.28/NS/NS/NS[27 h])				I. Peter & J. Yun
	Krl MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-1.46/NS/-2.77[27 h])				I. Peter & J. Yun
	Dac MASO50		NS/NS/NS/NS	(-3.72/-1.83/-3.36/-2.46[24 h])(NS/-1.53/-1.47/-1.94[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(+2.68/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Bra MASO		NS/NS/NS/NS	(-2.09/-2.96/-2.79/NS[24 h])(NS/-4.95/-1.49/-1.68[27 h])				I. Peter & J. Yun
	Myc MASO		NS/NS/NS/NS	(-1.58/-2.32/-1.83/NS[24 h])(NS/-2.07/NS/NS[27 h])				I. Peter & J. Yun
	Hox11/13b MASO		NS/NS/-2.33	(NS/NS/-4.06[24 h])(NS/NS/-1.82[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(-1.93/-2.66/-3.91[24 h])(-2.73/-2.47/-2.53[27 h])				I. Peter
vegfrII	Hex MASO		NS/NS	NS/-4.03				Q. Tu, P. Oliveri & J. Yun
	Ets1 MASO		NS/NS/NS/NS	-3.66/-2.49/-3.8/-2.4				Q. Tu, P. Oliveri & J. Yun
	Dri MASO		NS/NS/NS	-1.62/-2.2/NS				Q. Tu, P. Oliveri & J. Yun
	Alx1 MASO		-2.56	-2.48	NS			P. Oliveri & Q. Tu
	Alx1 MASO		NS/NS	NS/-2.87				Q. Tu, P. Oliveri & J. Yun
	FoxN2/3 MASO		NS/NS/NS	NS/-1.84/NS				Q. Tu, P. Oliveri & J. Yun
	Tgif MASO		NS/NS/NS/NS	NS/NS/NS/-2.51				Q. Tu, P. Oliveri & J. Yun
	Erg MASO		NS/NS/NS/NS/NS	NS/-2.89/-2.48/NS/NS				Q. Tu, P. Oliveri & J. Yun
wnt8	Blimp1b MASO	NS/NS	-1.6/NS	(NS[24 h])(NS[27 h])NS				C. Livi, I. Peter & J. Yun
	Blimp1b-En	-4.2 (6 h),-2.0/-3.7	-3.2	NS				C. Livi
	Cad MOE	-4.5 (6 h)/-5.4/-5.3/-11.5	-3.9/-2.8	-5.3/-5.0/-4.9				A. Ransick, P. Oliveri & L. Vega
	Otx-En	NS/NS	+2.6/+7.7/+2.1	NS/NS/NS				A. Ransick & T. Minokawa
	GataE MASO15		NS/+2.3/NS/NS/NS	(NS/NS[24 h])(NS/NS[27 h])NS,NS/NS,NS/NS,NS				P. Y. Lee, I. Peter & J. Yun
	Soxb1 MOE26	-2.3,-2.8	-2.3,-2.6	NS,-2.3/NS				L. Chen
	Pmar1 MOE	+2.3		-4.1				P. Oliveri & L. Vega
	Pmar1-En			-2.6				P. Oliveri & L. Vega
	Bra MASO		-2.01/NS/+1.76/NS	(NS/NS/NS/NS[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Otxa MASO		NS/+1.71/NS	(NS/NS/NS[24 h])(NS/NS/NS[27 h])				I. Peter
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/-1.66[24 h])(NS/-2.36/NS[27 h])				I. Peter
z166	Gcm MASO			-2.01/-1.75/-2.07/-1.58				S. Materna
z188	GataE MASO		NS/NS/NS/NS	(NS/NS/NS/NS[24 h])(NS/-1.68/NS/NS[27 h])				I. Peter & J. Yun
	Blimp1b MASO		-1.83/NS/NS/NS/NS	(-2.22/NS/NS/NS/NS[24 h])(NS/-2.09/-1.49/-2.09/NS[27 h])				I. Peter & J. Yun
	N MASO		NS/NS/NS	(NS/NS/NS/+1.68[24 h])(NS/NS/NS/NS[27 h])				I. Peter & J. Yun
	Eve MASO	NS/NS	NS/NS/NS	(NS/NS/-1.77[24 h])(-1.71/NS/NS[27 h])				I. Peter
z48	Tgif MASO		NS/NS/NS/NS	NS/+1.71/NS/NS				Q. Tu, P. Oliveri & J. Yun

Note: Smaller effects are shown as "NS", except where individual NS data are included together with other significant measurements to display scatter or inconsistencies amongst different batches of cDNA. Commas separate replicate measurements in the same cDNA batch; slashes indicate different batches of cDNA from independent experiments, dashes indicate a missing data point

Perturbations

Perturbation:	Genes not affected or shown to be affected only indirectly (0 to 24h, unless otherwise noted)
Alx1 MASO	L1 (18, 24, 30 h), cyclophillin, delta, endo16, ets1, eve, gatac, gcm, pmar1, sm/pm27, snail, tbr, [erg, foxA, foxN2/3, foxO, hex, hnf6, jun, not, pks, soxC, tel, z48 (18-24 h)]
Blimp1b MASO	bra, hox11/13b, lim1, [dac, delta, hesC, msx, notch (18-27 h)]
Blimp1b-En	dec, dpt, endo16, foxa, gatae, gcm, not, nrl, otx a, pks, pmar1, soxb1, tbr
Bra MASO	capk, dec, delta, dpt, ephx, ficolin, msp130-like, nrl, pks, sm50, tbr, [blimp1b, dac, eve, foxN2/3, gcm, hesC, myc, notch, soxB1, soxC, z188 (18-27 h)]
Brn1/2/4 MASO	[Brn1/2/4, otxb1/2 (18, 30, 45 h)], [gatae, hox11/13b (45 h)]
Cad MOE	dec, elk, endo16, foxc, hnf6, nrl, soxb1, tbr, z12-1
Dac MASO	[blimp1b, bra, delta, eve, foxN2/3, gataC, gcm, hesC, myc, notch, soxB1, soxC, wnt8, z188 (18-27 h)]
DnN MOE	blimp1, bra, capk, dec, delta, e(spl)-1, elk, endo16, eve, foxa, foxb, gatac, hmx, hox11/13b, not, notch, nrl, otx b1/2, su(h), tbr, wnt8
Dri MASO	N, bra, delta, dri (in pmc's), e(s), ets1, eve, foxa, gatae, gcm, hnf6, hox11/13b, lim1, pmar1, tbr, wnt8, z12-1, [elk, otx a, su(h) (16-20 h)], [alx1, erg, foxN2/3, msp130L, pks, soxC, tel, z48 (18-24 h)], [not, nrl (16-24 h)]
Dri-En	delta, dri (in pmc's), ets1, hnf6, pmar1, tbr, z12-1 (16-20 h)
Elk-En	delta, elk, hnf6
Erg MASO	[foxN2/3, gcm, pmar1, soxC, tbr, z48 (18-24 h)]
Ets1 MASO	delta, endo16, eve, foxb, gcm, pmar1, sm30, tbr, [jun, krl, pks, z48 (18-24 h)]
Eve MASO	alx1, cyclophilin, dri, ets1, foxc, gatac, gatac, gsc, hmx, msp130, not, otx a, otx b1/2, otx b3, pmar1, sm30, soxb1, tbr, [foxG, msx, myc, notch, soxC (15-27 h)]
FoxA MASO	b1/2otx, hmx, not (0-48 h), nrl, otx a, pks, tbr, [brn1/2/4, delta, eve, hox11/13b, wnt8 (18-27, 32, 48 h)], [blimp1, foxc (18, 24, 32, 48 h)], [alx1, blimp1b, dac, elk, foxN2/3, foxP, hesC, hnf1, msx, myc, notch, otxb1/2, soxB1, soxC, tgif, unc4.1, z188 (18-27 h)]
FoxB MASO	cyclophillin, endo16, ets1, ficolin, foxa, gatae, hox11/13b, sm27, sm50, tbr, wnt8
FoxN2/3 MASO	[cyclophillin, dri, foxA, foxN2/3, foxb, gatac, gcm, hex, hnf6, jun, krl, msp130, msp130L, not, pm27, pmar1, sm50, snail, soxC, tbr, tgif, z48 (18-24 h)]
GataC MASO	bra, capk, delta, dpt, elk, eve, gatae, gcm, not, pks
GataE MASO	??????, blimp1, capk, dec, dri, elk, ets1, eve, ferritin, gatae, gcm, hmx, nk1, otx a, [alx1, dac, delta, foxN2/3, hesC, soxB1, soxC (18-27 h)]
Gcm MASO	capk, dec, delta, elk, gatac, gatae, hmx, not, nrl
Gsc MASO	alx1, blimp1, bra, decorin, delta (in pmc's), dri, ets1, eve, foxb, fvmo, gatac, gcm, gsc, hmx, hnf6, krl, pks, pmar1, tbr, wnt8, z12-1 (17, 23 h)
Hex MASO	[dri, foxA, gcm, gsc, jun, krl, pmar1, tbr, z48 (18-24 h)]
Hnf1 MASO	[Brn1/2/4, alx1, blimp1b, bra, dac, delta, elk, endo16, eve, foxG, foxN2/3, foxP, foxa, foxb, gatac, gatae, gcm, hh, hox11/13b, krl, msx, myc, notch, otxb1/2, soxC, soxb1, tgif, unc4.1, wnt8, z188 (24-27 h)]
Hnf6 MASO	alx1, blimp1, bra, cyclophillin, delta, dri (in pmc's), elk, ets1, eve, foxa, gatae, gcm, hnf6 (in pmc's), otx a, pmar1, tbr, wnt8, [foxb, krl, z12-1 (19-20 h)]
Hox11/13b MASO	blimp1, otx a, otx b, soxb1, wnt8, [Brn1/2/4, alx1, dac, delta, elk, hnf6, otxb1/2, soxC, z188 (18-27 h)]
Krl MASO	alx1, blimp1, bra, dec, delta (12, 18-27 h), dri, ets1, eve, eve, gatae, gcm, gsc, hmx, krl, lim1, nrl, otx b1/2, pm27, pmar1, sm50, tbr, wnt8, z12-1, [dac, foxN2/3, foxP, gataC, hesC, msx, myc, notch, soxC, z188 (18-27 h)]
MutantSu(H) MOE	[endo16, sm50 (18, 24, 30 h)]
Myc MASO	[blimp1b, bra, dac, delta, endo16, eve, foxG, foxN2/3, foxP, gataC, gataE, gcm, hesC, hnf6, notch, soxB1, soxC, wnt8, z188 (18-27 h)]
N MASO	[foxa, foxb (18-27, 29, 41 h)], [bra, eve (21, 24-27, 29, 41 h)], [espl1, gatae, hmx, nrl, su (21, 29, 41 h)], [brn1/2/4, dac, foxN2/3, foxP, hesC, hh, myc, soxB1, soxC, wnt8 (18-27 h)]
Otx-En	dec, delta, elk, eve, gcm, otx a, pks, tbr
OtxHD MASO	[alx1, blimp1b, bra, dac, delta, elk, eve, foxN2/3, foxP, gatae, gcm, hnf6, hox11/13b, krl, myc, notch, otxb1/2, soxC, soxb1, unc4.1, wnt8, z188 (18-27 h)]
Otxa MASO	[alx1, blimp1b, bra, endo16, eve, foxG, foxP, foxa, foxb, gatac, gatae, gcm, hox11/13b, myc, soxC, soxb1, tgif, unc4.1, z188 (18-27 h)]
Pmar1 MOE	blimp1, elk, foxa, hnf6, krl, sm30, wnt8
Pmar1-En	blimp1, elk, foxa, hnf6, sm30, wnt8
SoxC MASO	[cyclophillin, dri, erg, ets1, foxO, hex, jun, msp130L, not, nrl, pm27, pmar1, sm50, snail, tbr, tel, vegfrII, z48 (18-24 h)], [alx1, blimp1b, bra, dac, delta, elk, endo16, eve, foxA, foxG, foxN2/3, foxP, foxb, gataC, gatae, gcm, hh, hnf1, hnf6, hox11/13b, krl, msx, myc, notch, otxb1/2, soxb1, unc4.1, wnt8, z188 (18-27 h)]
Soxb1 MASO	blimp1, bra, dec, dpt, dri, elk, endo16, foxa, foxb, foxc, gatac, krl, nrl, pmar1, wnt8, z12-1, [delta, gatae, gcm, hox11/13b, tbr (0-16 h)]
Soxb1 MOE	blimp1, dri, endo16, hnf6, tbr
Soxb1-En	alx1 (12 h), [bra, delta, endo16, ets-1, eve, foxa, foxb, gatac, gcm, hox11/13b, krl, msp130, pm27, sm50, wnt8 (18, 24 h)]
Tbr MASO	alx1, cyclophilin, delta, endo16, ets1, ets1, eve, ficolin, gatae, gcm, msp130, msp130L, pm27, [cyclophillin, foxA, foxN2/3, foxO, gatac, hex, jun, not, pks, pmar1, soxC, tel, vegfrII, z48 (18-24 h)]
Tel MASO	[cyclophillin, dri, erg, ets1, ficolin, foxA, foxB, foxN2/3, foxO, gcm, hex, hnf6, jun, krl, msp130, msp130L, not, pks, pmar1, pmar1, soxC, tbr, vegfrII, z48 (18-24 h)]
Tgif MASO	[cyclophillin, ets1, jun, pmar1, tbr, tel (18-24 h)], [dac, delta, elk, endo16, eve, gatac, hesC, hox11/13b, msx, myc, notch, soxC, wnt8, z188 (18-27 h)]

Footnotes

¹Must be affected indirectly via intercellular signaling because Bra is not present in cells where these genes are active.

²At 30 h affected indirectly via cell signaling, since at 30 h Dri and Gsc are expressed only in OE.

³Thought to be indirect input, via GataE.

⁴Probably via GataC.

⁵Probably via Bra.

⁶Probably in OE where both Elk and Lim1 are expressed then.

⁷Probably indirect via Gcm.

⁸Probably indirect via gcm.

⁹The inputs inferred from effects on endo16.

¹⁰Effect on endo16 is via Ui since no necessary GataE site in endo16.

¹¹Probably via ets1; based on ECRA.

¹²Indirect, because rescued by blimp1 MOE.

¹⁴Probably indirect via elk.

¹⁵Weak effect 18 h only, probably not significant, since wnt8 expression is disappearing in gatae domain at 18 h. Effect seen is probably via Otx which represses wnt8 in this period.

¹⁷Likely indirect via gatae.

¹⁸Late Krl effects likely to be indirect results of effects of Krl loss on endomesoderm specification (Howard et al., 2000).

¹⁹Obviously indirect via pmar1.

²⁰Only when dri is expressed in OE (>30 h).

²¹Possibly indirect via, because if there were an Otx site in gatac gene effect would have been seen earlier than 24 h.

²²Must be indirect because direct sm50 inputs are known.

²³Normalized to different standards in same run, i.e., ubiquitin and 18S rRNA.

²⁴ alx1 expressed specifically in pmc's; discovered by Ettensohn et al.

²⁶In collaboration with R. and L. Angerer who provided the samples measured.

²⁷Likely an artifact of expressing Blimp1-En MOE pmc's, since foxb is expressed only in pmc's at this stage (i.e., there could be a later interaction of Blimp1 and Soxb in hindgut where they are both expressed after gastrulation).

²⁸Weak effect likely indirect since gatac is expressed in smc's at 27 h and foxb in pmc's, later hindgut on oral side (plus oral ectoderm).

³⁰Not indirect via GataE because N MASO does not affect gatac though dnN does.

³¹Indirect effects on gatac does not turn on until after Tcf input is faded out, but all other inputs depend on endomesoderm specification.

³²Effect on initial phase of gatac expression, before it becomes exclusive with gcm (oral vs aboral and lateral).

³³Could be indirect via Ets1 effect on tbr; effect of Ets1 on foxb is stronger than tbr effect on foxb.

³⁴At least early (<24 h) effects on the three fvmo genes probably via gcm.

³⁵Via dri (see Amore et al., 2002).

³⁷Implies late blastula pmc domain to mesoderm indirect effect on oral side, where gatac is then expressed in mesoderm: not yet understood.

³⁸Since Gsc is a repressor (Angerer et al.) implies existence of mid-late blastula repressor of skeletogenic function controlled by gsc: perhaps a timing device.

⁴⁰Very possibly indirect via dri.

⁴¹Unlikely a direct transcriptional effect, since eve expression is not affected by Soxb1-Eng MOE.

⁴²Possibly indirect.

⁴³Likely via dri.

⁴⁵Probably in OE because most gsc expression at 24 h is there.

⁴⁷Double perturbation results show both inputs, Alx1 and Ets1, are required when indicated.

⁴⁸Data for mesenchyme blastula stage of Lytechinus variegatus

⁴⁹Probably Indirect

⁵⁰Unc4.1 is expressed in the aboral veg1 ectoderm, starting at 24h; effect must be indirect