ECB-FEAT-23165839: Difference between revisions
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===SPU_002633 (<i>Strongylocentrotus purpuratus</i> Genome assembly v.3.1)=== | ===SPU_002633 (<i>Strongylocentrotus purpuratus</i> Genome assembly v.3.1)=== | ||
The first 8aa of the original 92aa predicted by the GLEAN model (SPU_002633.1) against the Spur0.5 genome does not seem to be present in Spur3.1 - this resulted in truncation of the model such that the homeodomain was not intact. An 8aa encoding exon used in the NCBI model XM_778259.1 (GNOMON prediction) was added to the 5prime end of the model to restore the predicted homeodomain. The overlapping WHL model does not predict a homeodomain containing peptide. | The first 8aa of the original 92aa predicted by the GLEAN model (SPU_002633.1) against the Spur0.5 genome does not seem to be present in Spur3.1 - this resulted in truncation of the model such that the homeodomain was not intact. An 8aa encoding exon used in the NCBI model XM_778259.1 (GNOMON prediction) was added to the 5prime end of the model to restore the predicted homeodomain. The overlapping WHL model does not predict a homeodomain containing peptide. | ||
===SPU_002630 (<i>Strongylocentrotus purpuratus</i> Genome assembly v.3.1)=== | |||
Hox6-8 family member designated Sp-hox8 (along with SPU_021309) in PMID: 17055477. The second (homeodomain-containing) exon of this model is near identical (98% at the aa level) to the second exon of SPU_021309 (Sp-Hox8). SPU_021309 occupies the position and is in the orientation within the Hox cluster described for Hox8 in PMID:16116652, whereas this model is between Sp-Hox9/10 and Sp-Hox11/13a and in the opposite orientation. This GLEAN prediction model spans scaffold gaps; its two exons are represented by separate WHL models. | |||
Latest revision as of 10:12, 18 January 2023
Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023
SPU_002633 (Strongylocentrotus purpuratus Genome assembly v.3.1)
The first 8aa of the original 92aa predicted by the GLEAN model (SPU_002633.1) against the Spur0.5 genome does not seem to be present in Spur3.1 - this resulted in truncation of the model such that the homeodomain was not intact. An 8aa encoding exon used in the NCBI model XM_778259.1 (GNOMON prediction) was added to the 5prime end of the model to restore the predicted homeodomain. The overlapping WHL model does not predict a homeodomain containing peptide.
SPU_002630 (Strongylocentrotus purpuratus Genome assembly v.3.1)
Hox6-8 family member designated Sp-hox8 (along with SPU_021309) in PMID: 17055477. The second (homeodomain-containing) exon of this model is near identical (98% at the aa level) to the second exon of SPU_021309 (Sp-Hox8). SPU_021309 occupies the position and is in the orientation within the Hox cluster described for Hox8 in PMID:16116652, whereas this model is between Sp-Hox9/10 and Sp-Hox11/13a and in the opposite orientation. This GLEAN prediction model spans scaffold gaps; its two exons are represented by separate WHL models.