https://wiki.echinobase.org/echinowiki/index.php?action=history&feed=atom&title=ECB-FEAT-23045511ECB-FEAT-23045511 - Revision history2026-06-28T03:48:02ZRevision history for this page on the wikiMediaWiki 1.44.2https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045511&diff=3692&oldid=prevMchess at 17:47, 27 April 20232023-04-27T17:47:27Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:47, 27 April 2023</td>
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</table>Mchesshttps://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045511&diff=3691&oldid=prevMchess: Created page with "===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0=== The gene model for LOC580282 appears to be incomplete, with the upstream locus, LOC115922232, most likely bein..."2023-04-27T15:55:13Z<p>Created page with "===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0=== The gene model for LOC580282 appears to be incomplete, with the upstream locus, LOC115922232, most likely bein..."</p>
<p><b>New page</b></p><div>===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0===<br />
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The gene model for LOC580282 appears to be incomplete, with the upstream locus, LOC115922232, most likely being part of this gene based on several lines of evidence. The lines of evidence for a split-gene misannotation include the lack of signal peptide sequences yielded by SMART ([https://academic.oup.com/nar/article/49/D1/D458/5940513?login=true Letunic et al., 2006]) and SignalP – 6.0 analyses ([https://www.nature.com/articles/s41587-021-01156-3 Teufel et al., 2022]), the absence of a 5’-UTR in the mRNA transcript, XM_030981285.1, and the adjacency of the coding loci on scaffold NW_022145596.1.<br />
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[[File:LOC580282 (Strongylocentrotus purpuratus) Misannotation.png|thumb|Incomplete Model (LOC580282) for <i>Strongylocentrotus purpuratus</i> in SMART]]<br />
[[File:Sp LOC115922232+LOC580282 FixedAnnotation.png|thumb|Complete Model (LOC115922232 and LOC580282) for <i>Strongylocentrotus purpuratus</i> in SMART]]<br />
<br />
[[File:SpPCDH23SP.png|thumb|Incomplete Model (LOC580282) for <i>Strongylocentrotus purpuratus</i> in Signal 6.0P]]<br />
[[File:SpFixedAnnotationLOC115922232+LOC580282.png|thumb|Complete Model (LOC115922232 and LOC580282) for <i>Strongylocentrotus purpuratus</i> in Signal 6.0P]]<br />
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===<i>Lytechinus variegatus</i> Genome Assembly v3.0===<br />
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The gene model, LOC121430458, appears to be incomplete, with the upstream locus, LOC121412825, actually being part of the gene based on several lines of evidence. These lines of evidence include the lack of signal peptide sequences yielded by SMART ([https://academic.oup.com/nar/article/49/D1/D458/5940513?login=true Letunic et al., 2006]) and Signal 6.0P analyses ([https://www.nature.com/articles/s41587-021-01156-3 Teufel et al., 2022]), the absence of a 5’-UTR of the mRNA transcript (XM_041627728.1), and the adjacency of the coding loci on chr1.<br />
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[[File:Lv Misannotation LOC121430458.png|thumb|Incomplete Model (LOC121430458) for <i>Lytechinus variegatus</i> in SMART]]<br />
[[File:LvLOC121412825+LOC121430458 SMART.png|thumb|Complete Model (LOC121412825 and LOC121430458) for <i>Lytechinus variegatus</i> in SMART]]<br />
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[[File:LOC121430458 Signal6.0P.png|thumb|Incomplete Model (LOC121430458) for <i>Lytechinus variegatus</i> in Signal6.0P]]<br />
[[File:LvLOC121412825+LOC121430458SignalP6.0.png|thumb|Complete Model (LOC121412825 and LOC121430458) for <i>Lytechinus variegatus</i> in Signal 6.0P]]</div>Mchess