https://wiki.echinobase.org/echinowiki/index.php?action=history&feed=atom&title=ECB-FEAT-23045476 2026-08-21T13:02:36Z Revision history for this page on the wiki MediaWiki 1.44.2 https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3717&oldid=prev 2023-05-01T20:28:29Z

<p><span class="autocomment">Patiria miniata Genome Assembly v3.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:28, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l17">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 Pmin SMART.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SMART]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 Pmin SMART.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SMART]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC119727897+fat4 SMART Pm.png|thumb|Complete Model (LOC119727897 and fat4) for Patiria miniata in SMART]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC119727897+fat4 SMART Pm.png|thumb|Complete Model (LOC119727897 and fat4) for <ins style="font-weight: bold; text-decoration: none;">''</ins>Patiria miniata<ins style="font-weight: bold; text-decoration: none;">'' </ins>in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 SignalP 6.0 Pm.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 SignalP 6.0 Pm.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC119727897 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC119727897 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3716&oldid=prev 2023-05-01T20:27:45Z

<p><span class="autocomment">Patiria miniata Genome Assembly v3.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:27, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l20">Line 20:</td> <td colspan="2" class="diff-lineno">Line 20:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 SignalP 6.0 Pm.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 SignalP 6.0 Pm.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC119727897 and ''fat4'') for ''Patiria miniata'' in SignalP 6.0]]</ins></div></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3715&oldid=prev 2023-05-01T20:21:39Z

<p><span class="autocomment">Strongylocentrotus purpuratus Genome Assembly v5.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:21, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l6">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[File:Fat4 SignalP 6.0 Sp.png|thumb|Incomplete Model (''fat4'') for ''Strongylocentrotus purpuratus'' in SignalP 6.0]]</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231andfat4 SignalP6.0 Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231andfat4 SignalP6.0 Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 ExPASy Sp.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in ExPASy]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 ExPASy Sp.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in ExPASy]]</div></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3714&oldid=prev 2023-05-01T20:16:52Z

<p><span class="autocomment">Strongylocentrotus purpuratus Genome Assembly v5.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:16, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l6">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">fat4 SignalP 6</del>.0 Sp.png|thumb|<del style="font-weight: bold; text-decoration: none;">Incomplete </del>Model (''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:<ins style="font-weight: bold; text-decoration: none;">LOC115922231andfat4 SignalP6</ins>.0 Sp.png|thumb|<ins style="font-weight: bold; text-decoration: none;">Complete </ins>Model (<ins style="font-weight: bold; text-decoration: none;">LOC115922231 and </ins>''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3712&oldid=prev 2023-05-01T20:12:50Z

<p><span class="autocomment">Patiria miniata Genome Assembly v3.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:12, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The gene model for fat4 appears to be incomplete, with the upstream locus, LOC119727897, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of 5’-UTR within the mRNA transcript, XM_038199976, and the adjacency of the coding loci on scaffold, NW_024037059.1.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The gene model for fat4 appears to be incomplete, with the upstream locus, LOC119727897, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of 5’-UTR within the mRNA transcript, XM_038199976, and the adjacency of the coding loci on scaffold, NW_024037059.1.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">''</del>Fat4<del style="font-weight: bold; text-decoration: none;">'' </del>Pmin SMART.png|thumb|Incomplete Model (''fat4'') for ''Patiria miniata'' in SMART]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 Pmin SMART.png|thumb|Incomplete Model (''fat4'') for ''Patiria miniata'' in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC119727897+fat4 SMART Pm.png|thumb|Complete Model (LOC119727897 and fat4) for Patiria miniata in SMART]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC119727897+fat4 SMART Pm.png|thumb|Complete Model (LOC119727897 and fat4) for Patiria miniata in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">''</del>Fat4<del style="font-weight: bold; text-decoration: none;">'' </del>SignalP 6.0 Pm.png|thumb|Incomplete Model (''fat4'') for ''Patiria miniata'' in SignalP 6.0]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 SignalP 6.0 Pm.png|thumb|Incomplete Model (''fat4'') for ''Patiria miniata'' in SignalP 6.0]]</div></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3711&oldid=prev 2023-05-01T20:11:50Z

<p><span class="autocomment">Strongylocentrotus purpuratus Genome Assembly v5.0</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:11, 1 May 2023</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The gene model for &#039;&#039;fat4&#039;&#039; appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The gene model for &#039;&#039;fat4&#039;&#039; appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">''</del>fat4<del style="font-weight: bold; text-decoration: none;">'' </del>SMART Sp.png|thumb|Incomplete Model (''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:fat4 SMART Sp.png|thumb|Incomplete Model (''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+<del style="font-weight: bold; text-decoration: none;">''</del>fat4<del style="font-weight: bold; text-decoration: none;">'' </del>SMART Sp.png|thumb|Complete Model(LOC115922231 and ''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SMART Sp.png|thumb|Complete Model(LOC115922231 and ''fat4'') for ''Strongylocentrotus purpuratus'' in SMART]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">''</del>fat4<del style="font-weight: bold; text-decoration: none;">'' </del>SignalP 6.0 Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:fat4 SignalP 6.0 Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+<del style="font-weight: bold; text-decoration: none;">''</del>fat4<del style="font-weight: bold; text-decoration: none;">'' </del>SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in SignalP 6.0]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:<del style="font-weight: bold; text-decoration: none;">''</del>Fat4<del style="font-weight: bold; text-decoration: none;">'' </del>ExPASy Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in ExPASy]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:Fat4 ExPASy Sp.png|thumb|Incomplete Model (''fat4'') for Strongylocentrotus purpuratus in ExPASy]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+<del style="font-weight: bold; text-decoration: none;">''</del>fat4<del style="font-weight: bold; text-decoration: none;">'' </del>ExPASy Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in ExPASy]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[File:LOC115922231+fat4 ExPASy Sp.png|thumb|Complete Model (LOC115922231 and ''fat4'') for Strongylocentrotus purpuratus in ExPASy]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===&lt;i&gt;Patiria miniata&lt;/i&gt; Genome Assembly v3.0===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===&lt;i&gt;Patiria miniata&lt;/i&gt; Genome Assembly v3.0===</div></td></tr> </table>

Mchess https://wiki.echinobase.org/echinowiki/index.php?title=ECB-FEAT-23045476&diff=3710&oldid=prev 2023-05-01T20:09:34Z

<p>Created page with &quot;===&lt;i&gt;Strongylocentrotus purpuratus&lt;/i&gt; Genome Assembly v5.0=== The gene model for &#039;&#039;fat4&#039;&#039; appears to be incomplete, with the upstream locus, LOC115922231, most likely being...&quot;</p> <p><b>New page</b></p><div>===&lt;i&gt;Strongylocentrotus purpuratus&lt;/i&gt; Genome Assembly v5.0===<br /> <br /> The gene model for &#039;&#039;fat4&#039;&#039; appears to be incomplete, with the upstream locus, LOC115922231, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the presence of only one stop codon and absence of short open reading frames within the 5’-UTR of the mRNA transcript, XM_030980680.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold, NW_022145596.1.<br /> <br /> [[File:&#039;&#039;fat4&#039;&#039; SMART Sp.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]<br /> [[File:LOC115922231+&#039;&#039;fat4&#039;&#039; SMART Sp.png|thumb|Complete Model(LOC115922231 and &#039;&#039;fat4&#039;&#039;) for &#039;&#039;Strongylocentrotus purpuratus&#039;&#039; in SMART]]<br /> <br /> [[File:&#039;&#039;fat4&#039;&#039; SignalP 6.0 Sp.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]<br /> [[File:LOC115922231+&#039;&#039;fat4&#039;&#039; SignalP 6.0 Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in SignalP 6.0]]<br /> <br /> [[File:&#039;&#039;Fat4&#039;&#039; ExPASy Sp.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in ExPASy]]<br /> [[File:LOC115922231+&#039;&#039;fat4&#039;&#039; ExPASy Sp.png|thumb|Complete Model (LOC115922231 and &#039;&#039;fat4&#039;&#039;) for Strongylocentrotus purpuratus in ExPASy]]<br /> <br /> ===&lt;i&gt;Patiria miniata&lt;/i&gt; Genome Assembly v3.0===<br /> <br /> The gene model for fat4 appears to be incomplete, with the upstream locus, LOC119727897, most likely being part of this gene based on several lines of evidence. These lines of evidence include the lack of a signal peptide yielded by SMART (Letunic et al., 2006) and SignalP – 6.0 analyses (Teufel et al., 2022), the absence of 5’-UTR within the mRNA transcript, XM_038199976, and the adjacency of the coding loci on scaffold, NW_024037059.1.<br /> <br /> [[File:&#039;&#039;Fat4&#039;&#039; Pmin SMART.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SMART]]<br /> [[File:LOC119727897+fat4 SMART Pm.png|thumb|Complete Model (LOC119727897 and fat4) for Patiria miniata in SMART]]<br /> <br /> [[File:&#039;&#039;Fat4&#039;&#039; SignalP 6.0 Pm.png|thumb|Incomplete Model (&#039;&#039;fat4&#039;&#039;) for &#039;&#039;Patiria miniata&#039;&#039; in SignalP 6.0]]</div>

Mchess