Mchess: /* Strongylocentrotus purpuratus Genome Assembly v5.0 */

2023-05-01T19:13:51Z

Strongylocentrotus purpuratus Genome Assembly v5.0

← Older revision		Revision as of 19:13, 1 May 2023
Line 1:		Line 1:
	===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0===		===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0===

	The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being part of this gene based on several lines of evidence. The lines of evidence for a split-gene misannotation include the lack of signal peptide sequences yielded by SMART (Letunic et al., 2006) and SignalP 6.0 analyses (Teufel et al., 2022), the absence of short open reading frames and stop codons within the 5’-UTR in the mRNA transcript, XM_030980581.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold NW_022145596.1.		The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being part of this gene based on several lines of evidence. The lines of evidence for a split-gene misannotation include the lack of signal peptide sequences yielded by SMART ([https://academic.oup.com/nar/article/49/D1/D458/5940513?login=true Letunic et al., 2006]) and SignalP 6.0 analyses ([https://www.nature.com/articles/s41587-021-01156-3 Teufel et al., 2022]), the absence of short open reading frames and stop codons within the 5’-UTR in the mRNA transcript, XM_030980581.1, yielded by the ExPASy Translate tool ([https://academic.oup.com/nar/article/31/13/3784/2904185 Gasteiger et al., 2003]), and the adjacency of the coding loci on scaffold NW_022145596.1.

	[[File:SMART LOC580257.png\|thumb\|Incomplete Model (LOC580257) for ''Strongylocentrotus purpuratus'' in SMART]]		[[File:SMART LOC580257.png\|thumb\|Incomplete Model (LOC580257) for ''Strongylocentrotus purpuratus'' in SMART]]

Mchess: Created page with "===Strongylocentrotus purpuratus Genome Assembly v5.0=== The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being..."

2023-05-01T13:56:39Z

Created page with "===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0=== The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being..."

New page

===<i>Strongylocentrotus purpuratus</i> Genome Assembly v5.0===

The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being part of this gene based on several lines of evidence. The lines of evidence for a split-gene misannotation include the lack of signal peptide sequences yielded by SMART (Letunic et al., 2006) and SignalP 6.0 analyses (Teufel et al., 2022), the absence of short open reading frames and stop codons within the 5’-UTR in the mRNA transcript, XM_030980581.1, yielded by the ExPASy Translate tool (Gasteiger et al., 2003), and the adjacency of the coding loci on scaffold NW_022145596.1.

[[File:SMART LOC580257.png|thumb|Incomplete Model (LOC580257) for ''Strongylocentrotus purpuratus'' in SMART]]
[[File:SMART LOC115922204+LOC580257.png|thumb|Complete Model (LOC115922204+LOC580257) for ''Strongylocentrotus purpuratus'' in SMART]]

[[File:SignalP 6.0 LOC580257.png|thumb|Incomplete Model (LOC580257) for ''Strongylocentrotus purpuratus'' in SignalP 6.0]]
[[File:SignalP6.0 LOC115922204+LOC580257.png|thumb|Complete Model (LOC115922204+LOC580257) for ''Strongylocentrotus purpuratus'' in SignalP 6.0]]

[[File:LOC580257 ExPASy.png|thumb|Incomplete Model (LOC580257) for ''Strongylocentrotus purpuratus'' in ExPASy]]
[[File:ExPASy LOC115922204+LOC580257.png|thumb|Complete model (LOC115922204+LOC580257) for ''Strongylocentrotus purpuratus'' in ExPASy]]

ECB-FEAT-23044680 - Revision history

Mchess: /* Strongylocentrotus purpuratus Genome Assembly v5.0 */

Mchess: Created page with "===Strongylocentrotus purpuratus Genome Assembly v5.0=== The gene model, LOC580257, appears to be incomplete, with the upstream locus, LOC115922204, most likely being..."