EchinoWiki - User contributions [en]

ECB-FEAT-23039506

2023-01-18T17:48:38Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_011913 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model spans multiple scaffold gaps in the Spur3.1 assembly.
===SPU_022903 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_011913
===SPU_011912 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_011913

ECB-FEAT-23150502

2023-01-18T17:48:38Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_001145 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The predicted peptide is much larger than galaxins reported from corals and repetitive. The overlapping WHL models divide this into two models.
===SPU_007174 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_001145.

ECB-FEAT-23073744

2023-01-18T17:48:37Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_002449 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_010379

ECB-FEAT-23073744

2023-01-18T17:48:36Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23029509

2023-01-18T17:48:35Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_011583 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
Monocarboxylate-transporter (Slc16a)-like encoding exons present in the original annotation of this model have subsequently been removed.

ECB-FEAT-23029509

2023-01-18T17:48:34Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23127964

2023-01-18T17:48:33Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_008600 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_013786, Sp-Ddx10

ECB-FEAT-23127964

2023-01-18T17:48:32Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23133662

2023-01-18T17:48:31Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_021672 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_020395

ECB-FEAT-23133662

2023-01-18T17:48:30Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23174211

2023-01-18T17:48:29Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_013457 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_011695
===SPU_015014 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_011695.

ECB-FEAT-23048320

2023-01-18T17:48:28Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_011346 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_009214
===SPU_012901 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_009214.

ECB-FEAT-23156643

2023-01-18T17:48:27Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_009876 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The original annotation of this model included exons encoding aldolase (class II) domain-containing peptide sequence. These exons have subsequently been removed from this model and are now represented by SPU_031055.

ECB-FEAT-23156643

2023-01-18T17:48:26Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23147250

2023-01-18T17:48:24Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_023742 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model is a duplicate of SPU_023742
===SPU_015098 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
SPU_023742 is a duplicate of this model

ECB-FEAT-23092102

2023-01-18T17:48:23Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_000161 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
Predicted peptide contains ZU5 domain which is also found in Tjp1(ZO-1) and Unc5-like netrin receptors.

ECB-FEAT-23092102

2023-01-18T17:48:23Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23050230

2023-01-18T17:48:21Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_008036 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_025120

ECB-FEAT-23050230

2023-01-18T17:48:21Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23175244

2023-01-18T17:48:19Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_016555 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_024257.
===SPU_018821 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_024257.
===SPU_022039 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_024257

ECB-FEAT-23060596

2023-01-18T17:48:18Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_022736 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_016688

ECB-FEAT-23060596

2023-01-18T17:48:17Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23179524

2023-01-18T17:48:16Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_017490 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_012895
===SPU_009009 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_012895
===SPU_024041 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_012895
===SPU_018111 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_012895

ECB-FEAT-23076941

2023-01-18T17:48:15Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_005366 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_005241
===SPU_017909 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_005241, Sp-Gne.

ECB-FEAT-23191170

2023-01-18T17:48:14Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_018408 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
Designated SpP16 in PMID:12373587

ECB-FEAT-23191170

2023-01-18T17:48:13Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23194769

2023-01-18T17:48:12Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_027723 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_022398, Sp-Ipo11.

ECB-FEAT-23194769

2023-01-18T17:48:11Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23038937

2023-01-18T17:48:10Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_028140 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_016418

ECB-FEAT-23038937

2023-01-18T17:48:09Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23064132

2023-01-18T17:48:08Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_025885 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
Designated 'Sp-RIG-I like 2' in PMID:17027739. This model has been integrated into SPU_007126

ECB-FEAT-23064132

2023-01-18T17:48:07Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23117513

2023-01-18T17:48:06Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_013294 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_015012

ECB-FEAT-23117513

2023-01-18T17:48:05Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23145189

2023-01-18T17:48:04Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_026331 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_005719, Sp-Axdnd1.

ECB-FEAT-23145189

2023-01-18T17:48:03Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23089031

2023-01-18T17:48:02Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_022546 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_021119

ECB-FEAT-23089031

2023-01-18T17:48:01Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23183753

2023-01-18T17:48:00Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_012911 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The overlapping WHL models WHL22.368446.0 and WHL22.368452.0 suggest this GLEAN prediction may represent two separate genes

ECB-FEAT-23183753

2023-01-18T17:47:59Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23032114

2023-01-18T17:47:58Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_017846 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The peptide predicted by this model in the Spur3.1 assembly than is shorter than that of the original GLEAN prediction generated against Spur0.5.
===SPU_017849 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The original GLEAN prediction of this model made against the Spur0.5 assembly predicted a larger peptide; on the Spur3.1 assembly this model is disrupted by scaffold gaps resulting in missing sequence (The model contains multiple non-consensus splice sites next to scaffold gaps). Part of the peptide predicted by this model is near identical to that predicted by SPU_017846 (Sp-Z313) on Spur3.1 Scaffold434; potential redundancy in the assembly.
===SPU_017850 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_017846, Sp-Z313.
===SPU_017847 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_017846

ECB-FEAT-23041365

2023-01-18T17:47:57Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_006865 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The sequence of this GLEAN prediction differs substantially on the Spur3.1 assembly from the original annotation made on the Spur0.5 assembly. On the Spur3.1 assembly, this GLEAN prediction has substantial overlap with SPU_021851, including some of the predicted zinc fingers, but not the sequence on which the SPU_021851 QPCR primers are based. This model is in a region of the Spur3.1 assembly where the structure of the GLEAN predictions differs considerably from the transcriptome-derived WHL models.

ECB-FEAT-23041365

2023-01-18T17:47:56Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23180231

2023-01-18T17:47:55Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_010885 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_030228
===SPU_018343 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_030228
===SPU_024848 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_030228
===SPU_010886 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_030228
===SPU_015049 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_030228

ECB-FEAT-23014689

2023-01-18T17:47:54Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_017753 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
The peptide predicted by this model is near identical to part of that predicted by SPU_012695 on Spur3.1 Scaffold25760; likely redundancy in the assembly (this model predicts additional N-terminal sequence not included in the SPU_012695 peptide, the SPU_012695 peptide predicts additional C-terminal sequence)

ECB-FEAT-23014689

2023-01-18T17:47:53Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23133768

2023-01-18T17:47:52Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_007610 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_026693
===SPU_024952 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_026693

ECB-FEAT-23088337

2023-01-18T17:47:51Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_027598 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This gene model is near identical at the nucleotide level and identical at the predicted amino acid level to part of SPU_011348 on Scaffold6205 in the Spur3.1 assembly (this model, which spans a large scaffold gap, is missing internal sequence present in SPU_011348); possible redundancy in the assembly.

ECB-FEAT-23088337

2023-01-18T17:47:50Z

BArsh: Created page with "Category:GenesPage automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 "

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023

ECB-FEAT-23117593

2023-01-18T17:47:49Z

BArsh:

[[Category:Genes]]Page automatically generated by ECB_legacy_importer Wed Jan 18 09:57:12 2023 
===SPU_026590 (Strongylocentrotus purpuratus Genome assembly v.3.1)===
This model has been integrated into SPU_015013