Links to Additional Echinoderm Datasets: Difference between revisions

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This page will provide links to additional datasets for various echinoderms organized by class.
This page will provide links to additional datasets for various echinoderms organized by class.


<p>'''Subphylum Echinozoa'''</p>
<p>'''Subphylum Echinozoa'''</p>
<p>Class Echinoidea (sea urchins)</p>
:Class '''Echinoidea''' (sea urchins)
<p>Class Holothuroidea (sea cucumbers)</p>
 
::''Eucidaris tribuloides'' (slate pencil urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_001188425.1 GCA_001188425.1]
 
::''Heliocidaris erythrogramma'' (short spined sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025617745.1 GCA_025617745.1]
 
::''Heliocidaris tuberculata'' (red sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_025618425.1 GCA_025618425.1]
 
::''Hemicentrotus pulcherrimus'' (sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_003118195.1 GCA_003118195.1]
 
::''Mesocentrotus franciscanus''
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_037976565.1 GCA_037976565.1]
 
::''Paracentrotus lividus'' (common urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_940671915.1 GCA_940671915.1]
 
::''Temnopleurus reevesii'' (Reeve's sea urchin)
:::Accession: [https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB12129 PRJDB12129]
 
 
:Class '''Holothuroidea''' (sea cucumbers)
 
::''Apostichopus japonicus'' (Japanese sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002754855.1 GCA_002754855.1]
 
::''Apostichopus parvimensis'' (warty sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000934455.1 GCA_000934455.1]
 
::''Holothuria leucospilota'' (black sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_029531755.1 GCA_029531755.1]
 
::''Holothuria scabra'' (sandfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_026123075.1 GCA_026123075.1]
 
::''Stichopus chloronotus'' (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021234535.1 GCA_021234535.1]
 


<p>'''Subphylum Asterozoa'''</p>
<p>'''Subphylum Asterozoa'''</p>
<p>Class Asteroidea (sea stars)</p>
:Class '''Asteroidea''' (sea stars)


::''Acanthaster planci'' (crown-of-thorns sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_001949145.1 GCA_001949145.1]
:::Publication: [http://doi.org/10.1038/nature22033 2017]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Acanthaster+planci SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23315 GEO]


<p>''Pisaster ochraceus'' (purple sea star)</p>
::''Asterias rubens'' (European sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/genome/?term=GCA_902459465.3 GCA_902459465.3]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Asterias+rubens SRA]


<p>''Asterias rubens'' (common sea star)</p>
::''Luidia sarsii'' (starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_949987565.1 GCA_949987565.1]


<p>''Acanthaster planci'' (crown-of-thorns sea star)</p>
::''Marthasterias glacialis'' (spiny starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_911728455.2 GCA_911728455.2]


<p>''Patiriella regularis'' (New Zealand sea star)</p>
::''Patiriella regularis'' (New Zealand sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_900067625.1 GCA_900067625.1]
:::Publication: [http://doi.org/10.1186/s13742-016-0125-6 2016]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Patiriella+regularis SRA]
 
::''Pisaster brevispinus'' (pink sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_023634235.1 GCA_023634235.1]
 
::''Plazaster borealis'' (octopus starfish)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_021014325.1 GCA_021014325.1]
 
::''Pisaster ochraceus'' (purple sea star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_010994315.2 GCA_010994315.2]
:::Publication: [http://doi.org/10.1111/mec.15386 2020]
:::[http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=848819311_uTfQQofCxtzMRnKAidqhoYa6eexL UCSC genome browser]
:::[https://www.ncbi.nlm.nih.gov/sra/?term=Pisaster+ochraceus SRA]
:::[https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144422 GEO]
 
 
:Class '''Ophiuroidea''' (brittle stars)
 
::''Ophiothrix spiculata'' (spiny brittle star)
:::Accession: [https://www.ncbi.nlm.nih.gov/assembly/GCA_000969725.1 GCA_000969725.1]


<p>Class Ophiuroidea (brittle stars)</p>


<p>'''Subphylum Crinozoa'''</p>
<p>'''Subphylum Crinozoa'''</p>
<p>Class Crinoidea</p>
:Class '''Crinoidea'''
 
::''Antedon bifida'' (rosy feather star)
:::Accession: [https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963402885.1 GCA_963402885.1]

Latest revision as of 08:49, 16 April 2024

This page will provide links to additional datasets for various echinoderms organized by class.


Subphylum Echinozoa

Class Echinoidea (sea urchins)
Eucidaris tribuloides (slate pencil urchin)
Accession: GCA_001188425.1
Heliocidaris erythrogramma (short spined sea urchin)
Accession: GCA_025617745.1
Heliocidaris tuberculata (red sea urchin)
Accession: GCA_025618425.1
Hemicentrotus pulcherrimus (sea urchin)
Accession: GCA_003118195.1
Mesocentrotus franciscanus
Accession: GCA_037976565.1
Paracentrotus lividus (common urchin)
Accession: GCA_940671915.1
Temnopleurus reevesii (Reeve's sea urchin)
Accession: PRJDB12129


Class Holothuroidea (sea cucumbers)
Apostichopus japonicus (Japanese sea cucumber)
Accession: GCA_002754855.1
Apostichopus parvimensis (warty sea cucumber)
Accession: GCA_000934455.1
Holothuria leucospilota (black sea cucumber)
Accession: GCA_029531755.1
Holothuria scabra (sandfish)
Accession: GCA_026123075.1
Stichopus chloronotus (greenfish sea cucumber/spiky sea cucumber/black knobby sea cucumber)
Accession: GCA_021234535.1


Subphylum Asterozoa

Class Asteroidea (sea stars)
Acanthaster planci (crown-of-thorns sea star)
Accession: GCA_001949145.1
Publication: 2017
SRA
GEO
Asterias rubens (European sea star)
Accession: GCA_902459465.3
SRA
Luidia sarsii (starfish)
Accession: GCA_949987565.1
Marthasterias glacialis (spiny starfish)
Accession: GCA_911728455.2
Patiriella regularis (New Zealand sea star)
Accession: GCA_900067625.1
Publication: 2016
SRA
Pisaster brevispinus (pink sea star)
Accession: GCA_023634235.1
Plazaster borealis (octopus starfish)
Accession: GCA_021014325.1
Pisaster ochraceus (purple sea star)
Accession: GCA_010994315.2
Publication: 2020
UCSC genome browser
SRA
GEO


Class Ophiuroidea (brittle stars)
Ophiothrix spiculata (spiny brittle star)
Accession: GCA_000969725.1


Subphylum Crinozoa

Class Crinoidea
Antedon bifida (rosy feather star)
Accession: GCA_963402885.1
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